Locus 7562

Sequence ID X_DroMel_CAF1
Location 18,833,840 – 18,833,942
Length 102
Max. P 0.968498
window12416

overview

Window 6

Location 18,833,840 – 18,833,942
Length 102
Sequences 5
Columns 116
Reading direction forward
Mean pairwise identity 92.90
Mean single sequence MFE -16.23
Consensus MFE -16.27
Energy contribution -16.11
Covariance contribution -0.16
Combinations/Pair 1.04
Mean z-score -1.37
Structure conservation index 1.00
SVM decision value 1.63
SVM RNA-class probability 0.968498
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18833840 102 + 22224390
----UGUUGGUC--GCAGAGCAUAAAAAAUUCAAAAAUAAA--------UAAAGAGCACAGGAAAAAAGUGAAUUUAUUUUAUACGUUCACUGCUCGUAAAAAUCAAUGAAAACAU
----.((((((.--...((((........(((.........--------....)))...........(((((((.(((...))).)))))))))))......))))))........ ( -13.72)
>DroSec_CAF1 70672 109 + 1
----UGUUGGUC--GCAGAGCAUAAA-AAUCCAAAAAUAAAUAAACAAAUAAAGAGCACAGGAGAAAAGUGAAUUUAUUUUAUACGUUCACUGCUCGUAAAAAUCAAUGAAAACAU
----.((((((.--...((((.....-..(((............................)))....(((((((.(((...))).)))))))))))......))))))........ ( -15.89)
>DroSim_CAF1 50892 101 + 1
----UGUUGGUC--GCAGAGCAUAAA-AAUCCAAAAAUAAA--------UAAAGAGCACAGGAAAAAAGUGAAUUUAUUUUAUACGUUCACUGCUCGUAAAAAUCAAUGAAAACAU
----.((((((.--...((((.....-..(((.........--------...........)))....(((((((.(((...))).)))))))))))......))))))........ ( -16.25)
>DroEre_CAF1 68431 101 + 1
----UGUUGGUC--ACAGAGCAUAAA-AAUCCAAAAAUAAA--------UAAAGAGCGCAGGAAAAAAGUGAAUUUAUUUUAUACGUUCACUGCUCGUAAAAAUCAAUGAAAACAU
----.((((((.--...((((.....-..(((.........--------...........)))....(((((((.(((...))).)))))))))))......))))))........ ( -16.25)
>DroYak_CAF1 67599 107 + 1
GUUGUGUUGGUCGAGCAGAGCAUAAA-AAUCCAAAAAUAAA--------UAAAGAGCACAGGAAAAAAGUGAAUUUAUUUUAUACGUUCACUGCUCGUAAAAAUCAAUGAAAACAU
(((..(((((((((((..........-..(((.........--------...........)))....(((((((.(((...))).)))))))))))).....))))))...))).. ( -19.05)
>consensus
____UGUUGGUC__GCAGAGCAUAAA_AAUCCAAAAAUAAA________UAAAGAGCACAGGAAAAAAGUGAAUUUAUUUUAUACGUUCACUGCUCGUAAAAAUCAAUGAAAACAU
.....((((((......((((........(((............................)))....(((((((.(((...))).)))))))))))......))))))........ (-16.27 = -16.11 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:09 2006