Locus 7555

Sequence ID X_DroMel_CAF1
Location 18,826,608 – 18,826,724
Length 116
Max. P 0.510255
window12393

overview

Window 3

Location 18,826,608 – 18,826,724
Length 116
Sequences 3
Columns 116
Reading direction reverse
Mean pairwise identity 85.34
Mean single sequence MFE -37.37
Consensus MFE -27.59
Energy contribution -27.40
Covariance contribution -0.19
Combinations/Pair 1.13
Mean z-score -1.76
Structure conservation index 0.74
SVM decision value -0.05
SVM RNA-class probability 0.510255
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18826608 116 - 22224390
GUGGCCGAAGGGGGGUGCUUACAGGUAGAUAAAGAGCCAUUGGCUAAUGCCCCAUUGGCGUGUGUUGUGCACUGCCAAAGGCUGGCAUUUGAUGGAAACAACACAAGAUGCAUUUU
...(((((.((((.(((((....)))........((((...)))).)).)))).)))))((((.(((((...(((((.....))))).....((....)).))))).))))..... ( -40.00)
>DroSec_CAF1 63471 116 - 1
GCGGCCGAAGCGGGGUGCUUGCAGGUAGAUAAAGAGCCAUUGGCUAAUGCCCCAUUGGCGUGUGUUGUGCACUGCCAAAGGCUGGCAUUUGAUGGAAACAACAGAAGAUGCAUUUU
.(((((.....((((((((....)))........((((...))))...))))).((((((.(((.....))))))))).)))))((((((..((.......))..))))))..... ( -42.10)
>DroEre_CAF1 61398 106 - 1
----CUCCAACUG------UAAGUGUAGAUAAAGAGCCAUUGGCUAAUGCCCCAUUGGCGUGUGUUGCGCGUUGCCAAAGGGUGGCAUUUGAUGGAAACAACACAAGAUGCAUUUU
----.........------.(((((((........((((..(((....)))....)))).((((((....((..((....))..)).......(....)))))))...))))))). ( -30.00)
>consensus
G_GGCCGAAGCGGGGUGCUUACAGGUAGAUAAAGAGCCAUUGGCUAAUGCCCCAUUGGCGUGUGUUGUGCACUGCCAAAGGCUGGCAUUUGAUGGAAACAACACAAGAUGCAUUUU
(((.((......)).)))......(((........((((..(((....)))((.(((((((((.....)))).))))).)).))))...((.((....)).)).....)))..... (-27.59 = -27.40 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:49 2006