| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 18,825,803 – 18,825,900 |
| Length | 97 |
| Max. P | 0.829231 |
| Location | 18,825,803 – 18,825,900 |
|---|---|
| Length | 97 |
| Sequences | 3 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 75.60 |
| Mean single sequence MFE | -13.87 |
| Consensus MFE | -9.12 |
| Energy contribution | -9.57 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.71 |
| SVM RNA-class probability | 0.829231 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18825803 97 - 22224390 GUGUGCAAUAAUAAAUUAAUGAAAUAAAUGUUUAUUACUUUUAUUUCAUGUGUGCGGCUUUCAUUUCCCCUCCCUACCGCAACACACCCCCUAUCCA (((((.............((((((((((.((.....)).))))))))))...(((((...................))))).))))).......... ( -19.71) >DroSec_CAF1 62681 97 - 1 GUGUGCAAUAAUAAAUUAAUGAAAUAAAUGUUUAUUACUUUCAUUUCGUGUGUGCGGCUCCCAUUCCCCCAACCCUCCGCUCCACUCCACCUAUCCA (((.................(((((.((.((.....)).)).)))))(((.(.((((...................)))).))))..)))....... ( -11.91) >DroEre_CAF1 60654 74 - 1 GUGUGCACUAAUAAAUUAAUGCAAUAAAUGUUUAUUACUUUUAUUUCAUGUGUGCGGCAACCAUUC-----------------------CCUAUCCA ..(..(((.((((((.(((((.(((....))))))))..))))))....)))..)(....).....-----------------------........ ( -10.00) >consensus GUGUGCAAUAAUAAAUUAAUGAAAUAAAUGUUUAUUACUUUUAUUUCAUGUGUGCGGCUACCAUUCCCCC__CC__CCGC__CAC_CC_CCUAUCCA .((..((...........((((((((((.((.....)).)))))))))).))..))......................................... ( -9.12 = -9.57 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:48 2006