| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 18,822,107 – 18,822,204 |
| Length | 97 |
| Max. P | 0.807590 |
| Location | 18,822,107 – 18,822,204 |
|---|---|
| Length | 97 |
| Sequences | 3 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 64.83 |
| Mean single sequence MFE | -32.60 |
| Consensus MFE | -13.42 |
| Energy contribution | -13.87 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.39 |
| Structure conservation index | 0.41 |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.807590 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18822107 97 + 22224390 AAUGGAGACCAAAUGCCUAGGCCUAGGGCUCCCAGCCAUCCUGGCACAAGGAGAAGGGUCAGGAAUUCGG-UUUACUGAACGAAAACGGAUAG----------GGAA-------A- .....(((((.(((.(((.(((((....((((..(((.....)))....))))..)))))))).))).))-))).(((..((....))..)))----------....-------.- ( -28.70) >DroSec_CAF1 59130 94 + 1 AAUGGAGACCAAGUG--GAGGCCUAGGGCUCCCAGCCAUCCUGGCGCA-GGAGAAGGGUCAGGAAUUUGG-UUUGCAGAAGGAAAAGGGAUAG----------GGAG-------A- ..((.((((((((((--(((.(....).))))......(((((((.(.-......).)))))))))))))-))).))................----------....-------.- ( -31.80) >DroYak_CAF1 58125 108 + 1 AAUG----CUCAAUG--GGGAGCGAGUCCUG-CAGCCAUCCUGGCGCUG-GAGAAGGGUCAGGAAUGCGAGACUGCAGGCGGAAAGGGAAUGGGGAUGGGAUGGGAACGGGGACGU ..((----(((....--..)))))..((((.-(.(((.(((((((.((.-....)).))))))).((((....))))))).)...)))).................(((....))) ( -37.30) >consensus AAUGGAGACCAAAUG__GAGGCCUAGGGCUCCCAGCCAUCCUGGCGCA_GGAGAAGGGUCAGGAAUUCGG_UUUGCAGAAGGAAAAGGGAUAG__________GGAA_______A_ ........((................(((.....))).(((((((.(........).))))))).......................................))........... (-13.42 = -13.87 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:44 2006