Locus 7551

Sequence ID	X_DroMel_CAF1
Location	18,821,968 – 18,822,059
Length	91
Max. P	0.690582

overview

Window 6

Location	18,821,968 – 18,822,059
Length	91
Sequences	4
Columns	115
Reading direction	reverse
Mean pairwise identity	85.87
Mean single sequence MFE	-30.28
Consensus MFE	-22.85
Energy contribution	-23.10
Covariance contribution	0.25
Combinations/Pair	1.00
Mean z-score	-1.66
Structure conservation index	0.75
SVM decision value	0.33
SVM RNA-class probability	0.690582
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18821968 91 - 22224390
-G--UGCAGGACUCGCUC--UG-------------------UGUGUGUUUGGACUAUUAUGUCCGGAGCUUAUUAACUGCGGGUCUCGCAAAUGCAAUGCAAAUAAGCAAAUUUG
-.--(((..(((((((..--..-------------------.(((.((((((((......)))).)))).))).....)))))))..))).......(((......)))...... ( -29.30)
>DroSec_CAF1 58991 91 - 1
-G--UGCAGGACUCGCUC--UG-------------------UGUGUGUUUGGACUAUUAUGUCCGGAGCUUAUUAACUGCGGGUCUCGCAAAUGCAAUGCAAAUAAGCAAAUUUG
-.--(((..(((((((..--..-------------------.(((.((((((((......)))).)))).))).....)))))))..))).......(((......)))...... ( -29.30)
>DroEre_CAF1 56979 110 - 1
-A--UGCAGGAGUCGCUC--UGCCUUCGCCGGCGCACGCAAUGUGUGUUUGGACUAUUAUGUCCGGAGCUUAUUAACUGCGGGUCUCGCAAAUGCAAUGCAAAUAAGCAAAUUUG
-.--((((......((((--((((......)))((((((...))))))..((((......)))))))))........((((.....))))..)))).(((......)))...... ( -32.80)
>DroYak_CAF1 57975 102 - 1
CAUUCGCAGGACUCGCUCAGUGCCU-------------CAGUGUGUGUUUGGACUAUUAUGUCCGGAGCUUAUUAACUGCGGGUCUCGCAAAUGCAAUGCAAAUAAGCAAAUUUG
((((.((..(((((((..(((....-------------.((((.((.(((((((......))))))))).)))).))))))))))..)).))))...(((......)))...... ( -29.70)
>consensus
_A__UGCAGGACUCGCUC__UG___________________UGUGUGUUUGGACUAUUAUGUCCGGAGCUUAUUAACUGCGGGUCUCGCAAAUGCAAUGCAAAUAAGCAAAUUUG
.....((..(((((((................................((((((......))))))((........)))))))))..))........(((......)))...... (-22.85 = -23.10 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:43 2006