Locus 7549

Sequence ID X_DroMel_CAF1
Location 18,820,379 – 18,820,489
Length 110
Max. P 0.846366
window12383

overview

Window 3

Location 18,820,379 – 18,820,489
Length 110
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 80.70
Mean single sequence MFE -40.38
Consensus MFE -24.52
Energy contribution -25.08
Covariance contribution 0.56
Combinations/Pair 1.19
Mean z-score -2.12
Structure conservation index 0.61
SVM decision value 0.77
SVM RNA-class probability 0.846366
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18820379 110 + 22224390
CAACACAUUGUCGCCCCAGACGCCAUUUUGGCA-UUGUUGUUGCGUGUAAUGGAUG---CCGUUAUGUGCAGAAGCAGUGGAAG-AGGGGUGGUAUUGG-----GGGGGGGGAGGAUAUC
......(((.((.((((.((..(((((((..((-(((((.(((((..((((((...---))))))..))))).)))))))....-.)))))))..))..-----..)))).)).)))... ( -42.90)
>DroSec_CAF1 57412 102 + 1
CAACACAUUGUCGCCCCAGACGCCAUUUUGGCU-UUGUUGUUGCGUGUAAUGGAUG---CCGUUAUGUGCAGAAGCAGAGGAAU-CGGGACGGGAUUGG-----GGCGG--------AUC
..........(((((((((.(.((.((((((((-(((((.(((((..((((((...---))))))..))))).)))))))...)-))))).))).))))-----)))))--------... ( -42.20)
>DroEre_CAF1 55468 107 + 1
CAACACAUUGUCGCCCCAGACGCCAUUUUGGCU-UUGUUGUUGCGUGUAAUGGAUG---CCGUUAUGUGCAGAAGCGUUGGAAUAAGGGACGGGACUGG----GGGG-----UGGAUUUC
.......(..((.((((((.((((((((..((.-..(((.(((((..((((((...---))))))..))))).)))))..))))...)).))...))))----))))-----..)..... ( -37.30)
>DroYak_CAF1 56369 105 + 1
CAACACAUUGUCGCCCCAGACGCCAUUUUGGCU-UUGUUGUUGCGUGUAAUGGAUG---CCGUUAUGUGCAGAAGCGGUGGAUU-CGAGAGGGGAUUGG-----GGG-----UGGUUUUC
..........(((((((.(((.((.(((((..(-(..((((((((..((((((...---))))))..))))...))))..))..-))))))).).)).)-----)))-----)))..... ( -37.60)
>DroPer_CAF1 84566 110 + 1
CAACACAUUGUCGCCCCAGACGCCAUUUUGCCUUUUGUUGUUGCGUGUAAUGGAUGUCGCCGUUAUGCUCAGAAAAGGUGG-----GGGACGUGGUCGGCGGCGGGG-----UGGGGGCU
.......((.(((((((...((((.(((..((((((....(((.(((((((((......))))))))).)))))))))..)-----))(((...)))))))..))))-----))).)).. ( -41.90)
>consensus
CAACACAUUGUCGCCCCAGACGCCAUUUUGGCU_UUGUUGUUGCGUGUAAUGGAUG___CCGUUAUGUGCAGAAGCGGUGGAAU_AGGGACGGGAUUGG_____GGG_____UGGAUAUC
.....((.(.(((.(((....(((.....)))...((((.(((((..((((((......))))))..))))).)))).........))).))).).))...................... (-24.52 = -25.08 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:40 2006