Locus 7547

Sequence ID X_DroMel_CAF1
Location 18,818,457 – 18,818,552
Length 95
Max. P 0.998723
window12379 window12380

overview

Window 9

Location 18,818,457 – 18,818,552
Length 95
Sequences 5
Columns 95
Reading direction forward
Mean pairwise identity 100.00
Mean single sequence MFE -20.80
Consensus MFE -20.80
Energy contribution -20.80
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.27
Structure conservation index 1.00
SVM decision value 0.07
SVM RNA-class probability 0.566544
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18818457 95 + 22224390
CUGCUGCGUGUUUAUUUAUUUGACUUGUGCAUGUCGCUUUUGGGUGUUAACUUUAAUAAUUAACGGCAUUAAUUGCCGCAUAUGUCACAUGUUUG
.....((((((..........(((.(((((....((((....))))..................((((.....))))))))).)))))))))... ( -20.80)
>DroSec_CAF1 55535 95 + 1
CUGCUGCGUGUUUAUUUAUUUGACUUGUGCAUGUCGCUUUUGGGUGUUAACUUUAAUAAUUAACGGCAUUAAUUGCCGCAUAUGUCACAUGUUUG
.....((((((..........(((.(((((....((((....))))..................((((.....))))))))).)))))))))... ( -20.80)
>DroSim_CAF1 40764 95 + 1
CUGCUGCGUGUUUAUUUAUUUGACUUGUGCAUGUCGCUUUUGGGUGUUAACUUUAAUAAUUAACGGCAUUAAUUGCCGCAUAUGUCACAUGUUUG
.....((((((..........(((.(((((....((((....))))..................((((.....))))))))).)))))))))... ( -20.80)
>DroEre_CAF1 53665 95 + 1
CUGCUGCGUGUUUAUUUAUUUGACUUGUGCAUGUCGCUUUUGGGUGUUAACUUUAAUAAUUAACGGCAUUAAUUGCCGCAUAUGUCACAUGUUUG
.....((((((..........(((.(((((....((((....))))..................((((.....))))))))).)))))))))... ( -20.80)
>DroYak_CAF1 54491 95 + 1
CUGCUGCGUGUUUAUUUAUUUGACUUGUGCAUGUCGCUUUUGGGUGUUAACUUUAAUAAUUAACGGCAUUAAUUGCCGCAUAUGUCACAUGUUUG
.....((((((..........(((.(((((....((((....))))..................((((.....))))))))).)))))))))... ( -20.80)
>consensus
CUGCUGCGUGUUUAUUUAUUUGACUUGUGCAUGUCGCUUUUGGGUGUUAACUUUAAUAAUUAACGGCAUUAAUUGCCGCAUAUGUCACAUGUUUG
.....((((((..........(((.(((((....((((....))))..................((((.....))))))))).)))))))))... (-20.80 = -20.80 +   0.00)

alignment

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secondary structure

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dotplot

Postscript

Window 0

Location 18,818,457 – 18,818,552
Length 95
Sequences 5
Columns 95
Reading direction reverse
Mean pairwise identity 100.00
Mean single sequence MFE -18.30
Consensus MFE -18.30
Energy contribution -18.30
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.50
Structure conservation index 1.00
SVM decision value 3.20
SVM RNA-class probability 0.998723
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18818457 95 - 22224390
CAAACAUGUGACAUAUGCGGCAAUUAAUGCCGUUAAUUAUUAAAGUUAACACCCAAAAGCGACAUGCACAAGUCAAAUAAAUAAACACGCAGCAG
...((.((((.(((.(((((((.....))))(((((((.....)))))))........)))..))))))).))...................... ( -18.30)
>DroSec_CAF1 55535 95 - 1
CAAACAUGUGACAUAUGCGGCAAUUAAUGCCGUUAAUUAUUAAAGUUAACACCCAAAAGCGACAUGCACAAGUCAAAUAAAUAAACACGCAGCAG
...((.((((.(((.(((((((.....))))(((((((.....)))))))........)))..))))))).))...................... ( -18.30)
>DroSim_CAF1 40764 95 - 1
CAAACAUGUGACAUAUGCGGCAAUUAAUGCCGUUAAUUAUUAAAGUUAACACCCAAAAGCGACAUGCACAAGUCAAAUAAAUAAACACGCAGCAG
...((.((((.(((.(((((((.....))))(((((((.....)))))))........)))..))))))).))...................... ( -18.30)
>DroEre_CAF1 53665 95 - 1
CAAACAUGUGACAUAUGCGGCAAUUAAUGCCGUUAAUUAUUAAAGUUAACACCCAAAAGCGACAUGCACAAGUCAAAUAAAUAAACACGCAGCAG
...((.((((.(((.(((((((.....))))(((((((.....)))))))........)))..))))))).))...................... ( -18.30)
>DroYak_CAF1 54491 95 - 1
CAAACAUGUGACAUAUGCGGCAAUUAAUGCCGUUAAUUAUUAAAGUUAACACCCAAAAGCGACAUGCACAAGUCAAAUAAAUAAACACGCAGCAG
...((.((((.(((.(((((((.....))))(((((((.....)))))))........)))..))))))).))...................... ( -18.30)
>consensus
CAAACAUGUGACAUAUGCGGCAAUUAAUGCCGUUAAUUAUUAAAGUUAACACCCAAAAGCGACAUGCACAAGUCAAAUAAAUAAACACGCAGCAG
...((.((((.(((.(((((((.....))))(((((((.....)))))))........)))..))))))).))...................... (-18.30 = -18.30 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:36 2006