Locus 7546

Sequence ID X_DroMel_CAF1
Location 18,817,677 – 18,817,792
Length 115
Max. P 0.500000
window12378

overview

Window 8

Location 18,817,677 – 18,817,792
Length 115
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 87.88
Mean single sequence MFE -32.64
Consensus MFE -26.22
Energy contribution -26.18
Covariance contribution -0.04
Combinations/Pair 1.05
Mean z-score -1.40
Structure conservation index 0.80
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18817677 115 + 22224390
AUAUAUU-UCCUUUUUUUUUUUUUUGGCUGAAAGAGGGAGAAAUUAUGUCAGCAGGACGGCGAAUUGA----GGGCCGGCUGUGUGAAUUAUUUAUGUGCCAACUGUCCUGCCCCAACAG
.....((-((((((((((...........)))))))))))).....(((..((((((((((.......----..)))(((.(..(((.....)))..))))....)))))))....))). ( -33.20)
>DroSec_CAF1 54838 110 + 1
AU----UU------UCUUUUUUUUUGGCUGAAAGAGGGAGAAAUUAUGUCAGCAGGACGGCGAAUCGAGCGAUGGCCGGGUGUGUGAAUUAUUUAUGUGCCAACUGUCCUGCCCCAACAG
.(----((------((((((((((.....)))))))))))))....(((..((((((((((..(((....))).))).((..(((((.....)))))..))....)))))))....))). ( -36.60)
>DroSim_CAF1 40046 120 + 1
AUAUAUUUUCCUUAUUUUUUUUUUUGGCUGAAAGAGGGAGAAAUUAUGUCAGCAGGACGGCGAAUCGAGCGAGGGCCGGGUGUGUGAAUUAUUUAUGUGCCAACUGUCCUGCCCCAACAG
.....((((((((.((((...........)))).))))))))....(((..((((((((((...((....))..))).((..(((((.....)))))..))....)))))))....))). ( -33.40)
>DroEre_CAF1 52898 105 + 1
AUAUAU-----------UUUUUGUUAGCUGAAAGAGGGAGAAAUUAUGUCAGCAGGACGGCAAAUCGA----GGGCCGGGUGUGUAAAUUAUUUAUGUGCCAACUGUCCUGCCCCAACAG
.....(-----------(((((.......))))))(((.((.......)).((((((((((.......----..))).((..(((((.....)))))..))....))))))))))..... ( -28.20)
>DroYak_CAF1 53684 105 + 1
AUAUAU-----------UUUUUGUUGGCUGAAAGAGGGAGAAAUUAUGUCAGCAGGACGGCGAAUCGA----GGGCCGGGUGUGUAAAUUAUUUAUGUGCCAACUGUCCUGCCCCAACAG
......-----------....((((((.(((......((....))...)))((((((((((.......----..))).((..(((((.....)))))..))....))))))).)))))). ( -31.80)
>consensus
AUAUAUU_______U_UUUUUUUUUGGCUGAAAGAGGGAGAAAUUAUGUCAGCAGGACGGCGAAUCGA____GGGCCGGGUGUGUGAAUUAUUUAUGUGCCAACUGUCCUGCCCCAACAG
...................................(((.((.......)).((((((((((.............))).((((..(((.....)))..))))....))))))))))..... (-26.22 = -26.18 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:34 2006