Locus 7545

Sequence ID X_DroMel_CAF1
Location 18,817,464 – 18,817,584
Length 120
Max. P 0.685112
window12377

overview

Window 7

Location 18,817,464 – 18,817,584
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 96.25
Mean single sequence MFE -27.22
Consensus MFE -23.64
Energy contribution -23.80
Covariance contribution 0.16
Combinations/Pair 1.10
Mean z-score -1.38
Structure conservation index 0.87
SVM decision value 0.32
SVM RNA-class probability 0.685112
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18817464 120 + 22224390
AAGCACAAAGGGAGGAAAAAUGCCUUCUAUACAAAAUGUGGAAGCCAAAAAGUUGCACAAAAUUGCCAAAGUUUUGUUUGCUUAUGCAUUGCACUGCCCUUGUCAACCGUUCGCCCUCCA
..........(((((.....((.((((((((.....)))))))).))...(((.((((((((((.....)))))))).(((....)))..)))))...................))))). ( -27.80)
>DroSec_CAF1 54641 120 + 1
AAACACAAAGGGAGGAAAAAUGCCUUCUAUACAAAAUGUGGAAGCCAAAAAGUUGCACAAAAUUGCCAAAGUUUUGUUUGCUUAUGCAUUGCACUGCCCUUGUCAACCGUUCGCCCUCCA
..........(((((.....((.((((((((.....)))))))).))...(((.((((((((((.....)))))))).(((....)))..)))))...................))))). ( -27.80)
>DroSim_CAF1 39848 120 + 1
AAACACAAAGGGAGGAAAAAUGCCUUCUAUACAAAAUGUGGAAGCCAAAAAGUUGCACAAAAUUGCCAAAGUUUUGUUUGCUUAUGCAUUGCACUGCCCUUGUCAACCGUUCGCCCUCCA
..........(((((.....((.((((((((.....)))))))).))...(((.((((((((((.....)))))))).(((....)))..)))))...................))))). ( -27.80)
>DroEre_CAF1 52678 120 + 1
AAACACAAAGGAGGAAAAAAUGUGUUCUAUACAAAAUGUGGAAGCCAAAAAGUUGCACAAAAUUGCCAAAGUUUUGUUUGCUUAUGCAUUGCACUGCCCUCGUCAACCGGUCGCCCUCCA
.........(((((......((..(((((((.....)))))))..))...(((.((((((((((.....)))))))).(((....)))..)))))((..(((.....)))..))))))). ( -26.70)
>DroYak_CAF1 53449 120 + 1
AAACACAAAGGGAAAAAAAGUGCUUUCUAUACAAAAUGUGGAAGCCAAAAAGUUGCACAAAAUUGCCAAAGUUUUGUUUGCUUAUGCAUUGCACUGCCCUUGUCAACCGUUCGCCCUCCA
.......(((((......(((((.(((((((.....)))))))((....((((...((((((((.....))))))))..))))..))...))))).)))))................... ( -26.00)
>consensus
AAACACAAAGGGAGGAAAAAUGCCUUCUAUACAAAAUGUGGAAGCCAAAAAGUUGCACAAAAUUGCCAAAGUUUUGUUUGCUUAUGCAUUGCACUGCCCUUGUCAACCGUUCGCCCUCCA
.......(((((......(((((((((((((.....)))))))).....((((...((((((((.....))))))))..))))..)))))......)))))................... (-23.64 = -23.80 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:33 2006