Locus 7544

Sequence ID X_DroMel_CAF1
Location 18,816,919 – 18,817,038
Length 119
Max. P 0.524914
window12376

overview

Window 6

Location 18,816,919 – 18,817,038
Length 119
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 89.28
Mean single sequence MFE -23.30
Consensus MFE -17.63
Energy contribution -17.96
Covariance contribution 0.33
Combinations/Pair 1.14
Mean z-score -1.51
Structure conservation index 0.76
SVM decision value -0.02
SVM RNA-class probability 0.524914
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18816919 119 - 22224390
UUUUUCACACCCACUGGGUUUGCUCUAUCAAAGGCAGAUUUUGUUUUGUUUUGCACUGUUGCAUAGUAUAUUAUUU-GUAUUUUUGUUGAAACGUUUGCCACUUAACGGGCACAUAAAAU
........((((...)))).(((((.......(((((((...(((((....((((....)))).((((((.....)-)))))......)))))))))))).......)))))........ ( -22.44)
>DroSec_CAF1 54117 119 - 1
UUUUUCACACCCACUGGGUUUGCUCUAUUAAAGGCAGAUUUUGUUUUGUUUUGCACCGUUUCACAGUAUAUUAUUU-UUAUUUUUGUUGAAACAUUUGCCACUUAACGGGCACAUAAAAU
........((((...)))).(((((.......(((((((..(((........)))..(((((((((.(((......-.)))..))).))))))))))))).......)))))........ ( -23.04)
>DroSim_CAF1 39322 119 - 1
UUUUUCACACCCACUGGGUUUGCUCUAUUAAAGGCAGAUUGUGUUUUGUUUUGCACCGUUUCACAGUAUAUUAUUU-UUAUUUUUGUUGAAACAUUUGCCACUUAACGGGCACAUAAAAU
........((((...)))).(((((.......(((((((.((((........)))).(((((((((.(((......-.)))..))).))))))))))))).......)))))........ ( -25.84)
>DroEre_CAF1 52151 120 - 1
UUUUUCACACCCACUGGGUUUUCUCUCUAAAAGGCAGAUUUUGUGUUGUUUUGCACCGUUUCACAGUUUAUUAUUUUUUAUUUUUGUUGAAACGUUUGCCACUUAACGGGCACAUAAAAU
.........(((...(((......))).....((((((....((((......))))((((((((((..((........))...))).))))))))))))).......))).......... ( -24.50)
>DroYak_CAF1 52943 103 - 1
UUUUUCACACCCACUGG----------------GCAGACUCUGUUUCGUUUUGCACCGUUUCACAGUAUAUUAUUU-UUGUUUUUGUUGAAACGUUUGCCACUUAACGGGCACAUAAAAU
.........(((....(----------------((((((..(((........)))..(((((((((.(((......-.)))..))).))))))))))))).......))).......... ( -20.70)
>consensus
UUUUUCACACCCACUGGGUUUGCUCUAUUAAAGGCAGAUUUUGUUUUGUUUUGCACCGUUUCACAGUAUAUUAUUU_UUAUUUUUGUUGAAACGUUUGCCACUUAACGGGCACAUAAAAU
.........(((...(((....))).......(((((((..(((........)))..(((((((((.(((........)))..))).))))))))))))).......))).......... (-17.63 = -17.96 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:32 2006