| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 18,816,070 – 18,816,174 |
| Length | 104 |
| Max. P | 0.795650 |
| Location | 18,816,070 – 18,816,174 |
|---|---|
| Length | 104 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 70.70 |
| Mean single sequence MFE | -18.56 |
| Consensus MFE | -12.34 |
| Energy contribution | -12.42 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.795650 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18816070 104 + 22224390 CACCCUGUAUUUGGUUUCGGGACAUGUUCCUGCCACAUCA--------CCCACUCA-----CCGCUCCCUUUGGGGAA-ACCGCACCCCCCUCC-AUCCCCAAAAUCGGUGUCCUGCCU ............(((...(((..((((.......))))..--------)))...((-----(((.....((((((((.-...............-.))))))))..)))))....))). ( -23.43) >DroSec_CAF1 53293 81 + 1 CACCCUGUAUUUGGUUUCGGGACAUGUUCCUGCCACACCA--------CCCACUUC-----------------------------CCCCCCUCC-CCCCAAAAAAUCGGUGUCCUGCCU ((((.....(((((....((((..................--------........-----------------------------......)))-).))))).....))))........ ( -10.35) >DroSim_CAF1 38495 82 + 1 CACCCUGUAUUUGGUUUCGGGACAUGUUCCUGCCACACCA--------CCCACUAC-----------------------------CCCCCCGCCCCCCCCAAAAAUCGGUGUCCUGCCU ((((..((.(((((...((((...................--------........-----------------------------...))))......))))).)).))))........ ( -11.01) >DroEre_CAF1 51381 95 + 1 CACCCUGUAUUUGGCUUCGGGACAUGUUCCUGCCACACCA--------ACCACUCCUCCCCCCUCUCCCUUUGGGGGA-A---------------CCCCCAAAAAUCGGUGUCCUGCCU ((((.......((((...((((....)))).)))).....--------.....................(((((((..-.---------------.)))))))....))))........ ( -25.20) >DroYak_CAF1 52163 104 + 1 CACCCUGUAUUUGGUUUCGGGACAUGUUCCUGCCACACCACACCACCCACCCCUCCUCUCCCCUCUUCCUUUGGGGGAAA---------------CCCUCAAAAAUCGGUGUCCUGCCU ((((.......((((..(((((.....)))))....)))).............................(((((((....---------------))).))))....))))........ ( -22.80) >consensus CACCCUGUAUUUGGUUUCGGGACAUGUUCCUGCCACACCA________CCCACUCC_____CC_CU_CCUUUGGGG_A_A_____CCCCCC_CC_CCCCCAAAAAUCGGUGUCCUGCCU ((((.......((((...((((....)))).))))..............................((((....))))..............................))))........ (-12.34 = -12.42 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:31 2006