Locus 7542

Sequence ID X_DroMel_CAF1
Location 18,815,455 – 18,815,566
Length 111
Max. P 0.996980
window12374

overview

Window 4

Location 18,815,455 – 18,815,566
Length 111
Sequences 5
Columns 116
Reading direction forward
Mean pairwise identity 89.86
Mean single sequence MFE -23.20
Consensus MFE -22.18
Energy contribution -22.02
Covariance contribution -0.16
Combinations/Pair 1.04
Mean z-score -1.94
Structure conservation index 0.96
SVM decision value 2.78
SVM RNA-class probability 0.996980
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18815455 111 + 22224390
UCUAAUUGAUUAAGCGUGAAAUAAUUUCUUUUGAUUGACUUCAAUUGAAAUGAAUUAUUCUUUAAUUGGAGGCGCGCAGUCGG-CGACCAAAAAAUAUGA----AAAAAGAAACGA
(((((((((........(((.((((((.(((..((((....))))..))).))))))))).)))))))))(((((.......)-)).))...........----............ ( -22.30)
>DroPse_CAF1 69295 110 + 1
UCUAAUUGAUUAAGCGUGAAAUAAUUUCUUUUGAUUGACUUCAAUUGAAAUGAAUUAUUCUUUAAUUGGAGGCGCGCUGUCGAAAGACGAAAAAAAAAAAAAUGGAAAAA------
((((........((((((.((((((((.(((..((((....))))..))).))))))))((((....)))).))))))(((....)))..............))))....------ ( -27.90)
>DroSec_CAF1 52657 115 + 1
UCUAAUUGAUUAAGCGUGAAAUAAUUUCUUUUGAUUGACUUCAAUUGAAAUGAAUUAUUCUUUAAUUGGAGGCGCGCAGUCGG-CGACCAAAAAAAAAAAAAUGAAAAAGAAAUGA
(((((((((........(((.((((((.(((..((((....))))..))).))))))))).)))))))))(((((.......)-)).))........................... ( -22.30)
>DroSim_CAF1 37857 115 + 1
UCUAAUUGAUUAAGCGUGAAAUAAUUUCUUUUGAUUGACUUCAAUUGAAAUGAAUUAUUCUUUAAUUGGGGGCGCGCAGUCGG-CGACCAAAAAAAAAAAAAUGAAAAAGAAAUGA
(((((((((........(((.((((((.(((..((((....))))..))).))))))))).)))))))))(((((.......)-)).))........................... ( -21.20)
>DroEre_CAF1 50738 108 + 1
UCUAAUUGAUUAAGCGUGAAAUAAUUUCUUUUGAUUGACUUCAAUUGAAAUGAAUUAUUCUUUAAUUGGAGGCGCGCAGUCGG-CGACCAAAA-------AAUGCAAAAGAAAAGA
(((((((((........(((.((((((.(((..((((....))))..))).))))))))).)))))))))(((((.......)-)).))....-------................ ( -22.30)
>consensus
UCUAAUUGAUUAAGCGUGAAAUAAUUUCUUUUGAUUGACUUCAAUUGAAAUGAAUUAUUCUUUAAUUGGAGGCGCGCAGUCGG_CGACCAAAAAAAAAAAAAUGAAAAAGAAAUGA
.............(((((.((((((((.(((..((((....))))..))).))))))))((((....)))).))))).(((....)))............................ (-22.18 = -22.02 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:30 2006