| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 18,813,689 – 18,813,779 |
| Length | 90 |
| Max. P | 0.940874 |
| Location | 18,813,689 – 18,813,779 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 97.78 |
| Mean single sequence MFE | -21.14 |
| Consensus MFE | -18.82 |
| Energy contribution | -18.90 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.89 |
| SVM decision value | 1.31 |
| SVM RNA-class probability | 0.940874 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18813689 90 + 22224390 ACGUGUCAUGGCCACCAUAAAAGUUUUGUGACACUUUUUUUCGCCUCGGAUGCCGCUUCUUCAGGUCUUUCCUUCGCGAAAGUCAAAAUC ..((((((..(..((.......)).)..))))))...(((((((...(((.(((.........)))...)))...)))))))........ ( -21.40) >DroSec_CAF1 51093 90 + 1 ACGUGUCAUGGCCACCAUAAAAGUUUUGUGACACUUUUUUUCGCCUCGGAUGCCGCUUCUUCAGGUCUUCCCUUCGCGAAAGUCAAAAUC ..((((((..(..((.......)).)..))))))...(((((((...(((.(((.........)))..)))....)))))))........ ( -21.30) >DroSim_CAF1 36094 90 + 1 ACGUGUCAUGGCCACCAUAAAAGUUUUGUGACACUUUUUUUCGCCUCGGAUGCCGCUUCUUCAGGUCUUCCCUUCGCGAAAGUCAAAAUC ..((((((..(..((.......)).)..))))))...(((((((...(((.(((.........)))..)))....)))))))........ ( -21.30) >DroEre_CAF1 49038 89 + 1 ACGUGUCAUGGCCACCAUAAAAGUUUUGUGACACUUU-UUUCGCCUCGGAUGCCUCUUCUUCAGGUCUUCCCUUCGCGAAAGUCAAAAUC ..((((((..(..((.......)).)..))))))..(-((((((...(((.((((.......))))..)))....)))))))........ ( -21.80) >DroYak_CAF1 49736 89 + 1 ACGUGUCAUGGCCACCAUAAAAGUUUUGUGACACUUU-UUUCGCCUCGAAUGCCUCUUCUUCAGGUCUUCCCUUCGCGAAAGUCAAAAUC ..((((((..(..((.......)).)..))))))..(-((((((...(((.((((.......)))).))).....)))))))........ ( -19.90) >consensus ACGUGUCAUGGCCACCAUAAAAGUUUUGUGACACUUUUUUUCGCCUCGGAUGCCGCUUCUUCAGGUCUUCCCUUCGCGAAAGUCAAAAUC ..((((((..(..((.......)).)..))))))....((((((...(((.(((.........)))..)))....))))))......... (-18.82 = -18.90 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:29 2006