| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 18,812,722 – 18,812,829 |
| Length | 107 |
| Max. P | 0.637767 |
| Location | 18,812,722 – 18,812,829 |
|---|---|
| Length | 107 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 70.54 |
| Mean single sequence MFE | -34.24 |
| Consensus MFE | -12.24 |
| Energy contribution | -14.56 |
| Covariance contribution | 2.32 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.36 |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.637767 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18812722 107 - 22224390 CCUGG-GGAA--UUCCAGGGGGUGAACGCACCUGCGGUGCACAGGUGAGUCGUCGGCACACCGGCUCGUUCGAAAAAAAUGCGAAAAAUAGC-AUAGCAC--AUAGU-------UUCACG (((((-(...--.))))))..((((((((....)))((((...((((.((.....)).)))).(((..((((.........))))....)))-...))))--.....-------))))). ( -35.60) >DroPse_CAF1 66094 104 - 1 CAUGG-UGCAGGGUGCA-GGGGUGAAUGCACCUGCCUCAUACGGAGGG-------GAAAAAAAAGACGUCCGAAAAAGGUAUGAUAAAUAUUUCUAUCAUAUCUAUU-------UUUCUG .((((-.(((((.((((-........))))))))).))))..(((.(.-------...........).)))(((((((((((((((........))))))))))..)-------)))).. ( -32.90) >DroSim_CAF1 34688 105 - 1 CCUGG-GGAA--UUCCAGGGGGUGAACGCACCUGCGGUGCACAGGUGAGUCGUCG--------GCUCGUUCGAAA-AAAUGCGAAAAAUAGC-AUAGCAC--AUAGUUGCUUGUUUCAUG (((((-(...--.))))))....(((((((((...)))))......((((.....--------))))))))((((-..((((........))-))((((.--.....))))..))))... ( -32.70) >DroEre_CAF1 48152 103 - 1 CCUGG-GGAA--UUCCAGGGGGUGAACGCACCUGCGGUGCACAGGUGAGUC---CGCUCGCCAGCUCGGAUGAAA-AAAUGCGAAAAAUAGC-AUAGCAG--AUAGC-------UUCAUG (((((-(...--.))))))..(((((.((..((((.((((...((((((..---..))))))...(((.((....-..)).)))......))-)).))))--...))-------))))). ( -39.00) >DroYak_CAF1 48862 104 - 1 CCUGGGGGAA--UUCCCGGCAGUGAACGCACCUGCGGUGCACAGGUGAGUC---GGCACACCAGCUCGGCUGAAA-AAAUGCGAAAAAUAAC-AUAGCAG--AUAGU-------UUCAUG .((((((...--.))))))..(((((((((((...))))).(((.(((((.---((....)).))))).)))...-...(((..........-...))).--...).-------))))). ( -31.02) >consensus CCUGG_GGAA__UUCCAGGGGGUGAACGCACCUGCGGUGCACAGGUGAGUC___GGCACACCAGCUCGUCCGAAA_AAAUGCGAAAAAUAGC_AUAGCAC__AUAGU_______UUCAUG (((((.........)))))..(((((.((((.....)))).(((((((((.............)))))))))..........................................))))). (-12.24 = -14.56 + 2.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:28 2006