Locus 7539

Sequence ID X_DroMel_CAF1
Location 18,811,992 – 18,812,088
Length 96
Max. P 0.993590
window12371

overview

Window 1

Location 18,811,992 – 18,812,088
Length 96
Sequences 4
Columns 99
Reading direction reverse
Mean pairwise identity 81.05
Mean single sequence MFE -29.20
Consensus MFE -21.91
Energy contribution -24.10
Covariance contribution 2.19
Combinations/Pair 1.11
Mean z-score -2.66
Structure conservation index 0.75
SVM decision value 2.41
SVM RNA-class probability 0.993590
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18811992 96 - 22224390
GCAGCUCCUUACUCA-CAUUAAAAAUGUCGCCCAGACAUUAGCAUUUUUAUAUGGCGAAU--AUGGAGCAUUGAGGAGAGGGAGCUGCAACGGCGACGA
((((((((((.(((.-..((((.((((((.....)))))).((...(((((((.....))--))))))).)))).)))))))))))))..((....)). ( -36.10)
>DroPse_CAF1 64807 81 - 1
GUAGCUCCUUCUGAACCAUUAAAAAUGUCUCUCAGACAUUAGCAUUUUUAUAUAGA---CAG--AGA--------GAGAGGGAG--GCACCGAGGA---
....((((((((...........((((((.....))))))....(((((.......---.))--)))--------.))))))))--..........--- ( -16.90)
>DroSec_CAF1 49485 98 - 1
GCAGCUCCUUACUCA-CAUUAAAAAUGUCGCCCAGACAUUAGCAUUUUUAUAUGGCGAAUAUAUGGAGCAUUGAGGAGAGGGAACUGCAACGUCGACGA
((((.(((((.(((.-..((((.((((((.....)))))).((.((..(((((.....)))))..)))).)))).)))))))).))))..((....)). ( -28.60)
>DroSim_CAF1 33946 98 - 1
GCAGCUCCUUACUCA-CAUUAAAAAUGUCGCCCAGACAUUAGCAUUUUUAUAUGGCGAAUAUAUGGAGCAUUGAGGAGAGGGAGCUGCAACGUCGACGA
((((((((((.(((.-..((((.((((((.....)))))).((.((..(((((.....)))))..)))).)))).)))))))))))))..((....)). ( -35.20)
>consensus
GCAGCUCCUUACUCA_CAUUAAAAAUGUCGCCCAGACAUUAGCAUUUUUAUAUGGCGAAUAUAUGGAGCAUUGAGGAGAGGGAGCUGCAACGUCGACGA
((((((((((.(((.........((((((.....))))))......((((((((.....))))))))........)))))))))))))........... (-21.91 = -24.10 +   2.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:27 2006