Locus 7538

Sequence ID X_DroMel_CAF1
Location 18,811,608 – 18,811,707
Length 99
Max. P 0.976061
window12370

overview

Window 0

Location 18,811,608 – 18,811,707
Length 99
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 85.20
Mean single sequence MFE -27.06
Consensus MFE -19.32
Energy contribution -19.56
Covariance contribution 0.24
Combinations/Pair 1.24
Mean z-score -2.87
Structure conservation index 0.71
SVM decision value 1.76
SVM RNA-class probability 0.976061
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18811608 99 - 22224390
-------------------AGGUUG--UCCUGUCAAGACCUAGACAACUAACGAACCAAGGAAAUAACAACUAAAAAGACGGUGACUAUGGCAAAUCUCUUGGCAGGACAACAACAACAA
-------------------..((((--((((((((((((((.(....(....)...).)))...................(....)...........)))))))))))))))........ ( -28.30)
>DroPse_CAF1 64248 120 - 1
CGGGAGGGGGGGGGUUCUUUGGCUGCCUCCUGUCAAGACCUAGACAACUAACGAACCAAGGAAAUAACAACUAAAAAGACGGUGACUAUGGCAAAUCUCUUGGCAGGACAACAACAACAA
((..(((((((.(((......))).)))))((((........)))).))..))..(((((((.....((.((....))..(....)..)).....)).)))))................. ( -26.00)
>DroSec_CAF1 49083 99 - 1
-------------------AGGCUG--UCCUGUCAAGACCUAGACAACUAACGAACCAAGGAAAUAACAACUAAAAAGACGGUGACUAUGGCAAAUCUUUUGGCAGGACAGCAACAACAA
-------------------..((((--((((((((((((((.(....(....)...).)))...................(....)...........)))))))))))))))........ ( -28.10)
>DroSim_CAF1 33031 99 - 1
-------------------AGGUUG--UCGGGGGGGGACCUAGACAACUAACGAACCAAGGAAAUAACAACUAAAAAGACGGUGACUAUGGCAAAUCUCUUGGCAGGACAACAACAACAC
-------------------.(((((--((..(((....))).)))))))......(((((((.....((.((....))..(....)..)).....)).)))))................. ( -23.50)
>DroEre_CAF1 47164 93 - 1
-------------------AGGUUG--UCCUGUCAAGACCUAGACAGCUAACGAACCAAGGAAAUAACAACUAAAAAGACGGUGACUAUGGCAAAUCUCUUGGCAGGACAGCAA------
-------------------..((((--((((((((((((((.(....(....)...).)))...................(....)...........)))))))))))))))..------ ( -29.40)
>consensus
___________________AGGUUG__UCCUGUCAAGACCUAGACAACUAACGAACCAAGGAAAUAACAACUAAAAAGACGGUGACUAUGGCAAAUCUCUUGGCAGGACAACAACAACAA
.....................((((..((((((((((((((.(....(....)...).)))...................(....)...........)))))))))))))))........ (-19.32 = -19.56 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:26 2006