Locus 7537

Sequence ID X_DroMel_CAF1
Location 18,811,360 – 18,811,453
Length 93
Max. P 0.957046
window12369

overview

Window 9

Location 18,811,360 – 18,811,453
Length 93
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 60.29
Mean single sequence MFE -21.60
Consensus MFE -10.60
Energy contribution -12.35
Covariance contribution 1.75
Combinations/Pair 1.25
Mean z-score -1.86
Structure conservation index 0.49
SVM decision value 1.47
SVM RNA-class probability 0.957046
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18811360 93 - 22224390
---UGCCUGGAA-----ACUUAUUCGUUUACCGAGUAAGGGGCAU--UUUCUCUGCUAGCC-----UAUACACGAAAUUGUACCCAAAGUACAUCUAC------------GAAUAAGUCA
---.........-----((((((((((....((.((((((((((.--......))))..))-----).))).))....(((((.....)))))...))------------)))))))).. ( -22.20)
>DroSec_CAF1 48832 81 - 1
---UG----GAUUAUGUAUUUAAACGUGUUCCGAGAAAGGGGCAU--UUUU------------------GCACGAAAUUGUACCCAAGGUACAUCUAG------------GAAUAAGUCA
---..----((((((((......))))(((((.(((.....(((.--...)------------------)).......((((((...))))))))).)------------)))).)))). ( -18.70)
>DroSim_CAF1 32785 76 - 1
---UG----GAA-----ACUUAUUCGUGUUCCGAGAAAGGGGCAU--UUUC------------------GCACGAAAUUGUACCCAAGGUACAUCUAG------------GAAUAAGUCA
---..----...-----(((((((((((((((......)))))))--((((------------------....)))).((((((...)))))).....------------)))))))).. ( -22.10)
>DroYak_CAF1 47453 110 - 1
UGCUGCCUUGAA-----ACU---UUAUGUUCCAAGGAGGCUAUAUAGUUUCACUGGUACCUACAUAUAUACACGAAAUUGUACCUAAGGUACAUAUACCUAGCUCUAAUGAAAGAAUA--
.(((.(((((.(-----((.---....))).))))).))).......(((((.(((...(((..((((..........((((((...))))))))))..)))..))).))))).....-- ( -23.40)
>consensus
___UG____GAA_____ACUUAUUCGUGUUCCGAGAAAGGGGCAU__UUUC__________________ACACGAAAUUGUACCCAAGGUACAUCUAC____________GAAUAAGUCA
.................(((((((((((((((......))))))).................................(((((.....))))).................)))))))).. (-10.60 = -12.35 +   1.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:25 2006