Locus 7535

Sequence ID X_DroMel_CAF1
Location 18,808,687 – 18,808,777
Length 90
Max. P 0.612098
window12366

overview

Window 6

Location 18,808,687 – 18,808,777
Length 90
Sequences 5
Columns 91
Reading direction forward
Mean pairwise identity 94.69
Mean single sequence MFE -20.75
Consensus MFE -16.32
Energy contribution -16.92
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -1.67
Structure conservation index 0.79
SVM decision value 0.16
SVM RNA-class probability 0.612098
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18808687 90 + 22224390
UCCGCUUUUUCCUG-CUUUAUUUUUGCUCUUCGCCAAGCAGAUUGAAUUUUGAUUUGGCGGGUAAUUGAACUUUUACUACAGCAGCCAACU
...........(((-((..............(((((((((((......)))).)))))))(((((........)))))..)))))...... ( -20.80)
>DroSec_CAF1 46183 90 + 1
GCCGCUUGCUACUGGGGUUAUUUUUGCUCUUCCCC-CGCAGAUGGGAUUUUGAUUUGGCGGGUAAUUGAACUUUUACUACAGCAGCCAACU
.(((.((((....((((..............))))-.)))).))).........(((((.(((((........)))))......))))).. ( -20.54)
>DroSim_CAF1 30173 90 + 1
UCCGCUUUUUCCUG-CUUUAUUUUUGCUCUUCGCCAAGCAGAUUGAAUUUUGAUUUGGCGGGUAAUUGAACUUUUACUACAGCAGCCAACU
...........(((-((..............(((((((((((......)))).)))))))(((((........)))))..)))))...... ( -20.80)
>DroEre_CAF1 44334 90 + 1
UCCGCUUUUUCCUG-CUUUAUUUUUGCUCUUCGCCAAGCAGAUUGAAUUUUGAUUUGGCGGGUAAUUGAACUUUUACUACAGCAGCCAACU
...........(((-((..............(((((((((((......)))).)))))))(((((........)))))..)))))...... ( -20.80)
>DroYak_CAF1 44766 90 + 1
UCCGCUUUUUCCUG-CUUUAUUUUUGCUCUUCGCCAAGCAGAUUGAAUUUUGAUUUGGCGGGUAAUUGAACUUUUACUACAGCAGCCAACU
...........(((-((..............(((((((((((......)))).)))))))(((((........)))))..)))))...... ( -20.80)
>consensus
UCCGCUUUUUCCUG_CUUUAUUUUUGCUCUUCGCCAAGCAGAUUGAAUUUUGAUUUGGCGGGUAAUUGAACUUUUACUACAGCAGCCAACU
.......................(((((...(((((((((((......)))).)))))))(((((........)))))..)))))...... (-16.32 = -16.92 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:23 2006