Locus 7533

Sequence ID X_DroMel_CAF1
Location 18,805,252 – 18,805,360
Length 108
Max. P 0.777888
window12363

overview

Window 3

Location 18,805,252 – 18,805,360
Length 108
Sequences 4
Columns 108
Reading direction forward
Mean pairwise identity 97.69
Mean single sequence MFE -17.98
Consensus MFE -17.21
Energy contribution -17.27
Covariance contribution 0.06
Combinations/Pair 1.05
Mean z-score -1.85
Structure conservation index 0.96
SVM decision value 0.55
SVM RNA-class probability 0.777888
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18805252 108 + 22224390
AAUAAAUAAGCAUAUAAUAAUUGAAAAUACAAUUAGCAUAAUUGCCGGCAGAGGCAGAUGCAAAAAAGUAUAAUUAACAUAAUUAGUGUUUACACAUAUUUAGCCAGC
......(((((((....((((((......))))))((((...((((......)))).))))........................)))))))................ ( -18.70)
>DroSec_CAF1 42753 108 + 1
AAUAAAUAAGCAUAUAAUAACUGAAAAUACAAUUAGCAUAAUUGCCGACAGAGGCAGAUGCAAAAAAGUAUAAUUAACAUAAUUAGUGUUUACACAUAUUUAGCCAGC
.........((....((((..((.(((((((((((((((...((((......)))).))))......((.......)).))))).)))))).))..))))..)).... ( -17.30)
>DroEre_CAF1 40959 108 + 1
AAUAAAUAAGCAUAUAAUAAUUGAAAAUACAAUUAGCAUAAUUGCUGGCAGAGGCAGAUGCAAAAAAGUAUAAUUAACAUAAUUAGUGUUUACACAUAUUUAGCCAUC
........(((((((..((((((......))))))..)))..))))(((....((....))....((((((....(((((.....))))).....)))))).)))... ( -17.90)
>DroYak_CAF1 41252 108 + 1
AAUAAAUAAGCAUAUAAUAAUUGAAAAUACAAUUAGCAUAAUUGCCGGCAGUGGCAGAUGCAAAAAAGUAUAAUUAACAUAAUUAGUGUUUACACAUAUUUAGCCAGC
......(((((((....((((((......))))))((((...(((((....))))).))))........................)))))))................ ( -18.00)
>consensus
AAUAAAUAAGCAUAUAAUAAUUGAAAAUACAAUUAGCAUAAUUGCCGGCAGAGGCAGAUGCAAAAAAGUAUAAUUAACAUAAUUAGUGUUUACACAUAUUUAGCCAGC
......(((((((....((((((......))))))((((...((((......)))).))))........................)))))))................ (-17.21 = -17.27 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:20 2006