Locus 7531

Sequence ID X_DroMel_CAF1
Location 18,801,105 – 18,801,210
Length 105
Max. P 0.931330
window12360

overview

Window 0

Location 18,801,105 – 18,801,210
Length 105
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.43
Mean single sequence MFE -29.50
Consensus MFE -20.45
Energy contribution -21.64
Covariance contribution 1.20
Combinations/Pair 1.15
Mean z-score -2.48
Structure conservation index 0.69
SVM decision value 1.21
SVM RNA-class probability 0.931330
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18801105 105 + 22224390
CCGAUGCCG-----CACACAUGUUCCAGCGUAAAAGAGCAAAA-GCGGAAAAAGGCAUCGGAGGAGCAU---------CAACUUGAGGUUCAAUUACUUGUAAUUUUAGCCUCAACGAAA
((((((((.-----......((((...((........))...)-)))......))))))))........---------....((((((((.(((((....)))))..))))))))..... ( -29.52)
>DroSec_CAF1 38651 103 + 1
CCGAUGCCG-----CACACAUGUUCCAGCGCACAAGAGCAAAAGGCGGAAAAAGGCAUCGG---AGCAU---------CAAGUUGAGGUUCAAUUACUUGUAAUUUUAGCCUCAACGAAA
(((((((((-----((....)))(((.((((......)).....)))))....))))))))---.....---------...(((((((((.(((((....)))))..))))))))).... ( -33.50)
>DroSim_CAF1 21961 95 + 1
CCGAUGCCG-----CACACAUGUUCCAGCGC--------AAAAGGCGGAAAAAGGCAUCGG---AGCAU---------CAAGUUGAGGUUCAAUUACUUGUAAUUUUAGCCUCAACGAAA
(((((((((-----((....)))(((.((..--------.....)))))....))))))))---.....---------...(((((((((.(((((....)))))..))))))))).... ( -33.70)
>DroEre_CAF1 36992 102 + 1
CCGAUGCCG-----CACACAUGUUCCACCAAAAAAGAGCAAAA-GCGGAAAAAGGCAUCGG---AGCAU---------CAACUUGAGGUUCAAUUACUUGUAAUUUUAGCCUCAACGAAA
(((((((((-----((....)))(((..(......).((....-)))))....))))))))---.....---------....((((((((.(((((....)))))..))))))))..... ( -28.10)
>DroYak_CAF1 37185 110 + 1
CCGAUGCCG-----CACACAUGUUUCAG-AAAAAAGAGCAAAA-GCGGAAAAAGGCAUCGG---AGCAACGGAGCAUCCAACUUGAGGUUCAAUUACUUGUAAUUUUAGCCUCAACGAAA
(((((((((-----((....))).....-........((....-)).......))))))))---......((.....))...((((((((.(((((....)))))..))))))))..... ( -28.80)
>DroPer_CAF1 50501 96 + 1
AUGAUGCCGCAGCGCACACAUGUUGCAUGG-----GGGCAGAG-G------CAGGGGCAGG---GGCAG---------CAUCUUGAGGUUCAAUUACUUGUAAUUUAAGCCGCAACAAAA
....((((...((.(...((((...)))).-----).))...)-)------))(.(((..(---(((..---------(.....)..))))(((((....)))))...))).)....... ( -23.40)
>consensus
CCGAUGCCG_____CACACAUGUUCCAGCGAAAAAGAGCAAAA_GCGGAAAAAGGCAUCGG___AGCAU_________CAACUUGAGGUUCAAUUACUUGUAAUUUUAGCCUCAACGAAA
((((((((............(((((..........))))).............)))))))).....................((((((((.(((((....)))))..))))))))..... (-20.45 = -21.64 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:17 2006