Locus 7530

Sequence ID X_DroMel_CAF1
Location 18,800,550 – 18,800,643
Length 93
Max. P 0.953439
window12359

overview

Window 9

Location 18,800,550 – 18,800,643
Length 93
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 76.02
Mean single sequence MFE -34.04
Consensus MFE -20.46
Energy contribution -21.06
Covariance contribution 0.60
Combinations/Pair 1.21
Mean z-score -2.09
Structure conservation index 0.60
SVM decision value 1.43
SVM RNA-class probability 0.953439
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18800550 93 + 22224390
CGAAAAUGUGUUCCCUUCUGCGAUUUAA-------------------GGGAUCCCUCCCGUUCUCGGAUUUCUGUACA-------AGAAUCUGGGGUAGAGGCAGGGAGCAUCAUAUGA-
.....((((((((((((((((.......-------------------((((....))))...((((((((.((.....-------)))))))))))))))...)))))))).)))....- ( -34.30)
>DroSec_CAF1 38101 85 + 1
CGAAAAUGUGUUCCCUUCUGCGAUUU---------------------GGGAUCUCGCCCGUUCUCGGAUUUCUGUACA-------CGAAUCCGGGUUA--GGCAGGGG----CAGACGA-
........((((..(((((((.....---------------------(((......)))...(((((((((.......-------.)))))))))...--.)))))))----..)))).- ( -27.20)
>DroSim_CAF1 21414 85 + 1
CGAAAAUGUGUUCCCUUCUGCGAUUU---------------------GGGAUCCCGCCCGUUCUCGGAUUUCUGUACG-------AGAAUCCGGGUUA--GGCAGGGG----CAGACGA-
........((((..(((((((.....---------------------((....))(((((((((((..........))-------))))..)))))..--.)))))))----..)))).- ( -29.30)
>DroEre_CAF1 36447 92 + 1
CGAAAAUGCGUUCCCUUCUGCGAUU----------------------GGGAUCCCUUCCGGGCUCGGAUUUCUGUACAGAAAUCCAGAAUUUGGGUUG--GGCAGGGGG---CUCACGA-
........(((..(((((((((((.----------------------...)))((.((((((.((((((((((....)))))))).)).))))))..)--)))))))))---...))).- ( -32.60)
>DroYak_CAF1 36623 108 + 1
CGAAAAUGUGUUCCCUUCUGCGAUUUGGGAUCUGAAAUCUGGGAUCUGGGAUUCCGCCCGGUCUCGGAUUUCUGUACA-------AGAAUCUGGGUUA--GGCAGGGAG---CACGCAAA
.......(((((((((.((..((((..((.((((((((((((((.(((((......))))))))))))))))......-------))).))..)))).--)).))))))---)))..... ( -46.80)
>consensus
CGAAAAUGUGUUCCCUUCUGCGAUUU_____________________GGGAUCCCGCCCGUUCUCGGAUUUCUGUACA_______AGAAUCUGGGUUA__GGCAGGGGG___CACACGA_
......((((...((((((((..........................(((......)))...(((((((((...............)))))))))......))))))))...)))).... (-20.46 = -21.06 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:16 2006