Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,074,789 – 2,074,903 |
Length | 114 |
Max. P | 0.700219 |
Location | 2,074,789 – 2,074,903 |
---|---|
Length | 114 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 90.96 |
Mean single sequence MFE | -42.95 |
Consensus MFE | -32.85 |
Energy contribution | -33.30 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.12 |
Mean z-score | -2.58 |
Structure conservation index | 0.76 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.700219 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2074789 114 - 22224390 UCGGCGG--ACGCUGCG----CACUGCUCAUUGCCUAUAAAUAGGCAGAUGGCCAUGGCCAAAAACACCUUGAGCAGGUGCUGAUGUCAAGUCCAAAUUCCGUGCACCAUGUGGCGUUCC .....((--((((..((----...(((((((((((((....))))))).((((....)))).........))))))(((((......................))))).))..)))))). ( -43.95) >DroSim_CAF1 660 114 - 1 UCGGCGG--ACGCUGCG----CACUGCUCAUUGCCUAUAAAUAGGCAAUUGUGCAUGGCCAAAAACACCUUGAGCAGGUGCUGAUGUCAAGUCCAAAUGCCAUGCACCAUGUGGCGUUCC .....((--((((..((----........((((((((....)))))))).(((((((((......(((((.....)))))..(((.....))).....)))))))))..))..)))))). ( -43.80) >DroYak_CAF1 808 120 - 1 UCGGCGGAGACGCUGUGCGAACAGUGUUCAUUGCCUAUAAAUAGACAGAUGGCCAUGGCCAAAAACACCUUGAGCAGGUGCUGAUGUCAAGUCCAAAUGCCAUGCACCAUGUGGCGUUCC ..(((((.((((((((....))))))))..)))))........((((..((((....))))....(((((.....)))))....)))).......((((((((.......)))))))).. ( -41.10) >consensus UCGGCGG__ACGCUGCG____CACUGCUCAUUGCCUAUAAAUAGGCAGAUGGCCAUGGCCAAAAACACCUUGAGCAGGUGCUGAUGUCAAGUCCAAAUGCCAUGCACCAUGUGGCGUUCC .........((((..(........(((((((((((((....))))))).((((....)))).........))))))(((((..(((.((........)).))))))))..)..))))... (-32.85 = -33.30 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:58 2006