Locus 7529

Sequence ID X_DroMel_CAF1
Location 18,789,654 – 18,789,752
Length 98
Max. P 0.848899
window12358

overview

Window 8

Location 18,789,654 – 18,789,752
Length 98
Sequences 3
Columns 98
Reading direction forward
Mean pairwise identity 91.55
Mean single sequence MFE -28.67
Consensus MFE -22.47
Energy contribution -22.47
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -3.06
Structure conservation index 0.78
SVM decision value 0.78
SVM RNA-class probability 0.848899
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18789654 98 + 22224390
ACGGCCAAACAUAUAGUUAGCAUUAACUAUAACCGAAUCGAUCCGAUUCCAUUCGAUUCGUUUCGCCCGCCAGGGAGGCCAGAAUUAAUUGCGGAGCA
..((((.....((((((((....))))))))..((((.(((..(((......)))..))).))))(((....))).)))).................. ( -28.40)
>DroSec_CAF1 36002 88 + 1
ACGGCCAAACAUAUAGUUAGCAUUAACUAUAACCGAAUCGAUCCGAUUC----------GAUUCGCCCGCCAGGGAGGCCAGAAUUAAUUGCCGAGCA
..((((.....((((((((....))))))))..((((((((......))----------))))))(((....))).)))).................. ( -28.80)
>DroSim_CAF1 19301 88 + 1
ACGGCCAAACAUAUAGUUAGCAUUAACUAUAACCGAAUCGAUCCGAUUC----------GAUUCGCCCGCCAGGGAGGCCAGAAUUAAUUGCCGAGCA
..((((.....((((((((....))))))))..((((((((......))----------))))))(((....))).)))).................. ( -28.80)
>consensus
ACGGCCAAACAUAUAGUUAGCAUUAACUAUAACCGAAUCGAUCCGAUUC__________GAUUCGCCCGCCAGGGAGGCCAGAAUUAAUUGCCGAGCA
..((((.....((((((((....))))))))...((((((...))))))................(((....))).)))).................. (-22.47 = -22.47 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:16 2006