Locus 7528

Sequence ID X_DroMel_CAF1
Location 18,788,539 – 18,788,633
Length 94
Max. P 0.875476
window12357

overview

Window 7

Location 18,788,539 – 18,788,633
Length 94
Sequences 4
Columns 110
Reading direction reverse
Mean pairwise identity 83.09
Mean single sequence MFE -14.89
Consensus MFE -13.34
Energy contribution -14.40
Covariance contribution 1.06
Combinations/Pair 1.04
Mean z-score -1.75
Structure conservation index 0.90
SVM decision value 0.89
SVM RNA-class probability 0.875476
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18788539 94 - 22224390
CCGAAAAUAUGCUGAAACUCAACUUUAGCAUGCUUAUCGGGGUAAAACACGAUACU-CCCCACCAC--------------CAUCCAUCCAUUGC-CAAAGAGAAUAAACU
((((.(((((((((((.......))))))))).)).))))(((((.....(((...-.........--------------.)))......))))-).............. ( -16.32)
>DroSec_CAF1 34936 109 - 1
CCGAAAAUAUGCUGAAACUCAACUUUAGCAUGCUUAUCGGGGUAAAACACGAUACCACACCACCACCCCCAUCCCUCCCUCAUCCAUCCUUUGC-CAAAGAGAAUAAACU
((((.(((((((((((.......))))))))).)).))))((((........))))................................((((..-...))))........ ( -18.10)
>DroEre_CAF1 33134 94 - 1
CCGAAAAUAUGCUGAAACUCAACUUUUGCAUGCUUAUCGGGGUAAAACACGAAACCAAACC-CCACCCC---------------CAUCCUUUCCCCAAAGAGAAUAAACU
..((.(((((((.(((.......))).))))).)).))(((((...............)))-)).....---------------..((((((....)))).))....... ( -13.06)
>DroYak_CAF1 33197 98 - 1
CCGAAAAUAUGCUGAAACUCAACUUUUGCAUGCUUAUCGGGGUAAAACACGAAACCUCACC-CCCCUCC---------CGC--ACAUCCUUUCCCAAAAGAGAAUAAACU
..((.(((((((.(((.......))).))))).)).))(((((...............)))-)).....---------...--...((((((....)))).))....... ( -12.06)
>consensus
CCGAAAAUAUGCUGAAACUCAACUUUAGCAUGCUUAUCGGGGUAAAACACGAAACCACACC_CCACCCC___________C__CCAUCCUUUCC_CAAAGAGAAUAAACU
((((.(((((((((((.......))))))))).)).))))((((........))))..............................((((((....)))).))....... (-13.34 = -14.40 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:15 2006