Locus 7525

Sequence ID X_DroMel_CAF1
Location 18,785,127 – 18,785,233
Length 106
Max. P 0.991160
window12349

overview

Window 9

Location 18,785,127 – 18,785,233
Length 106
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 91.65
Mean single sequence MFE -22.62
Consensus MFE -18.24
Energy contribution -18.84
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -2.55
Structure conservation index 0.81
SVM decision value 2.25
SVM RNA-class probability 0.991160
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18785127 106 - 22224390
---UCGCCUCAUUUUCGUGGGC-A--AGUGUCAUC-GAAAAUUAAUUGCUAAACAAAUGUCUAAUCUUUGGCAUUUAAAAAGCGCAUAAAUCAAGCGCAAAUCAAACACUACA-------
---..(((.(((....))))))-.--(((((....-.....((((.(((((((.............))))))).))))...((((.........)))).......)))))...------- ( -23.12)
>DroSec_CAF1 31596 108 - 1
---UCGCCUCAUUUUCGUGGGC-AAAAGUGUCAUC-GAAAAUUAAUUGCUAAACAAAUGUCUAAUCUUUGGCAUUUAAAAAGCGCAUAAAUCAAGCGCAAAUCAAACACUACA-------
---..(((.(((....))))))-...(((((....-.....((((.(((((((.............))))))).))))...((((.........)))).......)))))...------- ( -23.12)
>DroEre_CAF1 29886 106 - 1
---UCGCCUCAUUUUCGUGGGC-A--AGUGUCAUC-GAAAAUUAAUUGCUAAACAAAUGUCUAAUCUUUGGCAUUUAAAAAGCGCAUAAAUCAAGCGCAAAUCAAACACUACA-------
---..(((.(((....))))))-.--(((((....-.....((((.(((((((.............))))))).))))...((((.........)))).......)))))...------- ( -23.12)
>DroYak_CAF1 29814 108 - 1
---UCGCCUCAUUUUCGUGGGC-AAAAGUGUCAUC-GAAAAUUAAUUGCUAAACAAAUGUCUAAUCUUUGGCAUUUAAAAAGCGCAUAAAUCAAGCGCAAAUCAAACACUACA-------
---..(((.(((....))))))-...(((((....-.....((((.(((((((.............))))))).))))...((((.........)))).......)))))...------- ( -23.12)
>DroPer_CAF1 39630 120 - 1
UGGCACCCUCAUUUUUGUGGACCGCAAGUGUCAUCCCAAAAUUAAUUGCUAAACAAAUGUCUAAUCUUUGCCAUUUAAAAAGCGCAUAAAUCAAGCGCAAAUCAAACACUACACAAGAAA
...........((((((((((((....).)))......................(((((.(........).))))).....((((.........)))).............)))))))). ( -20.60)
>consensus
___UCGCCUCAUUUUCGUGGGC_A_AAGUGUCAUC_GAAAAUUAAUUGCUAAACAAAUGUCUAAUCUUUGGCAUUUAAAAAGCGCAUAAAUCAAGCGCAAAUCAAACACUACA_______
.....(((.(((....))))))....(((((..........((((.(((((((.............))))))).))))...((((.........)))).......))))).......... (-18.24 = -18.84 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:08 2006