Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 18,784,981 – 18,785,082 |
Length | 101 |
Max. P | 0.928088 |
Location | 18,784,981 – 18,785,082 |
---|---|
Length | 101 |
Sequences | 3 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 83.78 |
Mean single sequence MFE | -10.77 |
Consensus MFE | -10.67 |
Energy contribution | -10.67 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -0.67 |
Structure conservation index | 0.99 |
SVM decision value | 1.19 |
SVM RNA-class probability | 0.928088 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18784981 101 + 22224390 CACAAAA-----------AAACACACACACAGAACAAAUUAAA---AAACAGAUGGAGAAAACAUAAAAAACUGUCAUGUGCUUGCCUCUGAAGUCACUGAA-AAUGUCACUGUCU .......-----------..........((((...........---...((((.((.....((((...........)))).....))))))..(.((.(...-.))).).)))).. ( -10.50) >DroSec_CAF1 31452 112 + 1 CACAAAAAAAAAAAAAAAAAACACACACACAGAACAAAUUAAA---AAACAGAUGGAGAAAACAUAAAAUACUGUCAUGUGCUUGCCUCUGAAGUCACUGAA-AAUGUCACUGUCU ............................((((...........---...((((.((.....((((...........)))).....))))))..(.((.(...-.))).).)))).. ( -10.50) >DroYak_CAF1 29685 96 + 1 UACAAAA-----------------AAACACAGAACAAAUUAAAAAAAAACAGAUGGAGAAAACAUAAAAAACUGUCAUGUGCUUGCCUCUGAAGU---UGAAAAAUGUCACUGUCU .......-----------------....((((.................((((.((.....((((...........)))).....))))))..((---(....)))....)))).. ( -11.30) >consensus CACAAAA___________AAACACACACACAGAACAAAUUAAA___AAACAGAUGGAGAAAACAUAAAAAACUGUCAUGUGCUUGCCUCUGAAGUCACUGAA_AAUGUCACUGUCU ............................((((.................((((.((.....((((...........)))).....)))))).......(((......))))))).. (-10.67 = -10.67 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:07 2006