Locus 7523

Sequence ID X_DroMel_CAF1
Location 18,784,175 – 18,784,281
Length 106
Max. P 0.538032
window12347

overview

Window 7

Location 18,784,175 – 18,784,281
Length 106
Sequences 4
Columns 112
Reading direction reverse
Mean pairwise identity 80.99
Mean single sequence MFE -22.68
Consensus MFE -12.73
Energy contribution -13.29
Covariance contribution 0.56
Combinations/Pair 1.06
Mean z-score -2.01
Structure conservation index 0.56
SVM decision value 0.01
SVM RNA-class probability 0.538032
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18784175 106 - 22224390
CCCCCUAUCCACCCA------GCUCCUUUAGGACACUGCCACGUCCCCUUGUCCCCUAUGACUUGCCUUGUCCUCCUCGUCCUUUGGCUGGCUGGUGUGGACCAUCAUCCAU
.......((((((((------(((((...(((((......(((......))).......(((.......)))......)))))..))..)))))).)))))........... ( -29.30)
>DroSec_CAF1 30727 112 - 1
CCCCCUUACCACCCACCCCCUGCUCCUUUAGUACACUGCCACGCCCCCUUGUCCCCUAUGACUUGCCUCGUCCUCCUCGUCCUUUGGCUGGCUGGUGUGGACCAUCAUCCAU
........(((((((.....((((.....))))....((((.(((.....(((......)))......((.......))......)))))))))).))))............ ( -20.80)
>DroSim_CAF1 15082 103 - 1
CCCCCUUACCAGCCACCCCCUGCUCCUUUAGGACACUGCCACGCCCCCUUGUCCCCUAUGACUUGCCUCG---------UCCUUUUGCUGGCUGGUGUGGACCAUCAUCCAU
...((.(((((((((......((......(((((...((...))......(((......))).......)---------))))...))))))))))).))............ ( -25.50)
>DroYak_CAF1 28977 91 - 1
ACUCC---------UCCCCCUGCUCCUUUAGGACACUGCCACGCC-CCUUGUCCCCUAUGACUUGCC-------CCUCGUCCUUUUGC----UGGUGUGGACCAUCAUCCAU
.....---------................(((.....(((((((-....(((......)))..((.-------............))----.))))))).......))).. ( -15.12)
>consensus
CCCCCUUACCACCCACCCCCUGCUCCUUUAGGACACUGCCACGCCCCCUUGUCCCCUAUGACUUGCCUCG____CCUCGUCCUUUGGCUGGCUGGUGUGGACCAUCAUCCAU
..............................(((.....(((((((.....(((......)))..(((..................))).....))))))).......))).. (-12.73 = -13.29 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:06 2006