Locus 7521

Sequence ID X_DroMel_CAF1
Location 18,783,655 – 18,783,755
Length 100
Max. P 0.999356
window12343

overview

Window 3

Location 18,783,655 – 18,783,755
Length 100
Sequences 5
Columns 115
Reading direction forward
Mean pairwise identity 87.43
Mean single sequence MFE -23.74
Consensus MFE -19.84
Energy contribution -20.64
Covariance contribution 0.80
Combinations/Pair 1.00
Mean z-score -3.33
Structure conservation index 0.84
SVM decision value 3.54
SVM RNA-class probability 0.999356
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18783655 100 + 22224390
--CAAGAAGAAGCAG---------UGCCACAGAAUUUCCCAGUGACAUCAAAAUUUACAUUUUGCACUCAAAAAGAGUGCGAAGUGAAAGGCAGAA----AAAAAAUUAAAGUGC
--.............---------((((...((((((.....((....)))))))).((((((((((((.....))))))))))))...))))...----............... ( -23.20)
>DroSec_CAF1 30190 100 + 1
--CAAGAAGAAGCAG---------UGCCACAGAAUUUCCCAGUGACAUCAAAAUUUACAUUUUGCACUCAAAAAGAGUGCGAAGUGAAAGGCAGCA----AAAAAAUUAAAGUGC
--.........((..---------((((...((((((.....((....)))))))).((((((((((((.....))))))))))))...)))))).----............... ( -24.70)
>DroSim_CAF1 14558 100 + 1
--CAAGAAGAAGCAG---------UGCCACAGAAUUUCCCAGUGACAUCAAAAUUUACAUUUUGCACUCAAAAAGAGUGCGAAGUGAAAGGCAGCA----AAAAAAUUAAAGUGC
--.........((..---------((((...((((((.....((....)))))))).((((((((((((.....))))))))))))...)))))).----............... ( -24.70)
>DroEre_CAF1 28537 105 + 1
--AAAGAAGAAGCAGCAGUAG--------CAGAAUUUCCCAGUGACAUCAAAAUUUACAUUUUGCACUCAAAAAGAGUGCGAAGUGAAAGGCAGAAAAAAAAAAAAUUAAAUGGC
--.........((.((....)--------)...........................((((((((((((.....))))))))))))....))....................... ( -21.00)
>DroYak_CAF1 28462 115 + 1
GAGAAGAAGAAGAAGCAGCAGCAUUGCCACAGAAUUUCCCAGUGACAUCAAAAUUUACAUUUUGCACUCAAAAAGAGUGCGAAGUGAAAGGCAGAAUAAAAAAAAAUUAAAGGCA
..............((....)).(((((...((((((.....((....)))))))).((((((((((((.....))))))))))))...)))))..................... ( -25.10)
>consensus
__CAAGAAGAAGCAG_________UGCCACAGAAUUUCCCAGUGACAUCAAAAUUUACAUUUUGCACUCAAAAAGAGUGCGAAGUGAAAGGCAGAA____AAAAAAUUAAAGUGC
........................((((...((((((.....((....)))))))).((((((((((((.....))))))))))))...))))...................... (-19.84 = -20.64 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:03 2006