Locus 7520

Sequence ID X_DroMel_CAF1
Location 18,783,268 – 18,783,362
Length 94
Max. P 0.937885
window12342

overview

Window 2

Location 18,783,268 – 18,783,362
Length 94
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 72.93
Mean single sequence MFE -23.13
Consensus MFE -3.40
Energy contribution -3.40
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.99
Structure conservation index 0.15
SVM decision value 1.26
SVM RNA-class probability 0.937885
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18783268 94 + 22224390
------GGG-GGCGUGGCGUAGUCGAAUAAACAAGCGGUAGG---AGAACG-------------AAGAAGGCAA---CAAACUUCUUCAACAAUCCAAUGAAAAAUUGUCCAAAUAAAUA
------..(-((((((.(((..............))).))((---(....(-------------((((((....---....))))))).....)))..........)))))......... ( -19.84)
>DroPse_CAF1 34478 113 + 1
------GGCAGAAGUGCUGCAG-CAAAUAAACAAGAAGCAGCCUUGCCACCUGGAAGCAGCAGCAAGAAGCAAAGCUGAAACUUCUUCAGAAAUCCAAUAAAAAACUGUCCAAAUAAAUA
------(((((..(((((((..-(..........)..)))))(((((...(((....)))..)))))..))....(((((.....)))))...............))))).......... ( -25.50)
>DroSec_CAF1 29817 95 + 1
------GGGGGGCGUGGCGUAGUCGAAUAAACUAGCAGGAGG---AGAACG-------------AAGAAGGCAA---CAAACUUCUUCAACAAUCCAAUGAAAAAUUGUCCAAAUAAAUA
------...(((((..((.((((.......))))))....((---(....(-------------((((((....---....))))))).....)))..........)))))......... ( -22.10)
>DroEre_CAF1 28143 109 + 1
GUGGGCGUG-GGCGUGGCGUAGUCGAAUAAACAAGCAGGAGG---GGCACGAGGAUGAAA----AAGAAGGCAA---CAAACUUCUUCAACAAUCCAAUGAAAAAUUGUCCAAAUAAAUA
.((((((..-..((((.(.(..((.............))..)---.))))).((((....----((((((....---....)))))).....))))..........))))))........ ( -22.72)
>DroPer_CAF1 36703 113 + 1
------GGCAGAAGUGCUGCAG-CAAAUAAACAAGAAGCAGCCUUGCCACCUGGAAGCAGCAGCAAGAAGCAAAGCUGAAACUUCUUCAGAGAUCCAAUAAAAAACUGUCCAAAUAAAUA
------(((((..(((((((..-(..........)..)))))(((((...(((....)))..)))))..))....(((((.....)))))...............))))).......... ( -25.50)
>consensus
______GGG_GGCGUGGCGUAGUCGAAUAAACAAGCAGCAGG___GGCACG_GGA_G_A_____AAGAAGGCAA___CAAACUUCUUCAACAAUCCAAUGAAAAAUUGUCCAAAUAAAUA
................................................................((((((...........))))))................................. ( -3.40 =  -3.40 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:02 2006