Locus 7519

Sequence ID X_DroMel_CAF1
Location 18,781,987 – 18,782,095
Length 108
Max. P 0.889809
window12341

overview

Window 1

Location 18,781,987 – 18,782,095
Length 108
Sequences 4
Columns 108
Reading direction forward
Mean pairwise identity 90.59
Mean single sequence MFE -32.00
Consensus MFE -28.45
Energy contribution -27.95
Covariance contribution -0.50
Combinations/Pair 1.07
Mean z-score -1.80
Structure conservation index 0.89
SVM decision value 0.96
SVM RNA-class probability 0.889809
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18781987 108 + 22224390
GCAAAUGAUUCAAUCAAUUUGGAUUAGAUGCCAAUUCUUUUUUGCGCGACAAGCUGCGGAUGUGGAAGCACAGCAAUGUGGAUUGGCGAACACUGCGUGAUUCUCUUA
(((..((((((((.....))))))))..(((((((((....(((((((......)))...((((....))))))))...))))))))).....)))............ ( -31.80)
>DroSec_CAF1 28452 108 + 1
GCAAAUGAUUCAAUCAAUUUGGAUUAGAUGCCAAUCCUUUUUUGCGCGACAAACUGCGGAUGUGGAAGCACAGCAAUGUGGAUUGGCGAACACCGCGUGAUUCAUUUA
((...((((((((.....))))))))..(((((((((....(((((((......)))...((((....))))))))...)))))))))......))............ ( -34.20)
>DroEre_CAF1 26947 108 + 1
GCAAAUGAUUCAAUCAAUUUGGAUUAGAUGUCAAUCCUUUUUUGCGCGACCAACUGCGGAUGUGGAAGCACAGAAAUGUGGAUUGGCGGACAAAGCGGGUUGCUCUUA
(((((((((((((.....))))))))(((....)))....)))))((((((..((..(..(((.((..((((....))))..)).)))..)..))..))))))..... ( -33.70)
>DroYak_CAF1 26696 108 + 1
GCAAAUGAUUCAAUCAAUUUGGAUUAGAUGUCAAUUCUUUUUUGCGCGACCAACUGCGAGUGUGGAAGCACAGAAUUGUGGAUUGGCGAACAAGGCGGGUUUCUCUUU
(((..((((((((.....))))))))..)))....(((.(((((..((.(((((..(((.((((....))))...)))..).))))))..))))).)))......... ( -28.30)
>consensus
GCAAAUGAUUCAAUCAAUUUGGAUUAGAUGCCAAUCCUUUUUUGCGCGACAAACUGCGGAUGUGGAAGCACAGAAAUGUGGAUUGGCGAACAAAGCGGGAUUCUCUUA
((...((((((((.....))))))))..(((((((((.......((((......))))..((((....)))).......)))))))))......))............ (-28.45 = -27.95 +  -0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:01 2006