Locus 7512

Sequence ID X_DroMel_CAF1
Location 18,753,214 – 18,753,305
Length 91
Max. P 0.881469
window12322

overview

Window 2

Location 18,753,214 – 18,753,305
Length 91
Sequences 4
Columns 91
Reading direction reverse
Mean pairwise identity 96.52
Mean single sequence MFE -27.18
Consensus MFE -25.11
Energy contribution -25.68
Covariance contribution 0.56
Combinations/Pair 1.04
Mean z-score -2.03
Structure conservation index 0.92
SVM decision value 0.92
SVM RNA-class probability 0.881469
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18753214 91 - 22224390
UCAUCAUCUCCAUGGUGGACGUCAUUGCUGCAGGUCCCAUCAAUGGCUUUCAUCAUUCAACAUUGUUAUCAGUGUUGGCGGCUGUGGCAAC
(((((((....)))))))..(((((.((((((((((........)))))........((((((((....))))))))))))).)))))... ( -30.80)
>DroSec_CAF1 13283 91 - 1
UCAUCAUCUCCAUCGUGGACGUCAUUGCUGCAGGUCCCAUCAAUGGCUUUCAUCAUUCAACAUUGUUAUCAGUGUCGGCGGCUGUGGCAAC
........(((.....))).(((((.((((((((((........)))))........(.((((((....)))))).)))))).)))))... ( -24.20)
>DroSim_CAF1 20971 91 - 1
UCAUCAUCUCCGUCGUGGACGUCAUUGCUGCAGGUCCCAUCAAUGGCUUUCAUCAUUCAACAUUGUUAUCAGUGUCGGCGGCUGUGGCAAC
...((((..((((((((((.(((((((.((.......)).))))))).)))).......((((((....))))))))))))..)))).... ( -26.20)
>DroEre_CAF1 21190 91 - 1
UCAUCAUCUCCAUCGUGGACGUCAUUGCUGCAGGUCCCAUCAAUGGCUUUCAUCAUUCAACAUUGUUAUCAGAGUUGGCGGCAAUGGCAAC
........(((.....))).((((((((((((((((........)))))........((((.(((....))).)))))))))))))))... ( -27.50)
>consensus
UCAUCAUCUCCAUCGUGGACGUCAUUGCUGCAGGUCCCAUCAAUGGCUUUCAUCAUUCAACAUUGUUAUCAGUGUCGGCGGCUGUGGCAAC
........(((.....))).(((((.((((((((((........)))))........((((((((....))))))))))))).)))))... (-25.11 = -25.68 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:45 2006