Locus 7511

Sequence ID X_DroMel_CAF1
Location 18,753,065 – 18,753,183
Length 118
Max. P 0.665339
window12321

overview

Window 1

Location 18,753,065 – 18,753,183
Length 118
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 86.25
Mean single sequence MFE -20.54
Consensus MFE -14.74
Energy contribution -15.74
Covariance contribution 1.00
Combinations/Pair 1.11
Mean z-score -1.82
Structure conservation index 0.72
SVM decision value 0.28
SVM RNA-class probability 0.665339
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18753065 118 - 22224390
AUGCCCCAAACACCCUCUGAUUUGCCACCCGUUAACUGGUCUAUGGAAUUACGCUGCAAAAAUAGCGAAAUAAAAACCAAAAUUGCAGAAAGGAGGA-AAACAAAAAAAAGAUGAAAAC
.............(((((..(((((.(((.(....).)))...(((.(((.(((((......))))).))).....))).....)))))..))))).-..................... ( -20.30)
>DroSec_CAF1 13140 112 - 1
AUGCCCCAAACACCCUCUGAUUUGCCACCCGUUAACUGGUCUAUGGAAUUACGCUGCAAAAAUAGCGAAAUAAAAACCAAAAUUGCAGAAAGGAGGA-AA------AAAAAACGAAAAC
.............(((((..(((((.(((.(....).)))...(((.(((.(((((......))))).))).....))).....)))))..))))).-..------............. ( -20.30)
>DroSim_CAF1 20827 112 - 1
AUGCCCCAAACACCCUCUGAUUUGCCACCCGUUAACUGGGCUAUGGAAUUACGCUGCAAAAAUAGCGAAAUAAAAACCAAAAUUGCAGAAAGGAGGA-AA------AAAAAACGAAAAC
.............(((((..(((((..((((.....))))...(((.(((.(((((......))))).))).....))).....)))))..))))).-..------............. ( -22.60)
>DroEre_CAF1 21049 110 - 1
AUGCCCCAAA-GUCCUCUGAUUUGCCACCCGUUAGCUGGGCUAUGAAAUUACGCUGCAAAAAUAGCGAAAUAAAAACCAAACACCCAAAAAGGAGGAAAA------AAACGAUAUAG--
..........-.((((((..((((...((((.....))))...........(((((......)))))..................))))..))))))...------...........-- ( -19.90)
>DroYak_CAF1 21815 110 - 1
AUGCCCCAAACGCCCUGCGUUUUGCCACCCGUUAACUGGGCUAUGAAAUUACGCUGCAAAAAUAGCGAAAUAAAAACCAAAAACCCAAAAAGGCG-AAAA------AAAGAACAUAU--
..............((...(((((((.((((.....))))...........(((((......)))))........................))))-))).------..)).......-- ( -19.60)
>consensus
AUGCCCCAAACACCCUCUGAUUUGCCACCCGUUAACUGGGCUAUGGAAUUACGCUGCAAAAAUAGCGAAAUAAAAACCAAAAUUGCAGAAAGGAGGA_AA______AAAAAACGAAAAC
.............(((((..(((((..((((.....))))...........(((((......))))).................)))))..)))))....................... (-14.74 = -15.74 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:44 2006