Locus 751

Sequence ID	X_DroMel_CAF1
Location	2,060,775 – 2,060,877
Length	102
Max. P	0.704379

overview

Window 7

Location	2,060,775 – 2,060,877
Length	102
Sequences	6
Columns	110
Reading direction	forward
Mean pairwise identity	80.44
Mean single sequence MFE	-38.02
Consensus MFE	-29.04
Energy contribution	-29.60
Covariance contribution	0.56
Combinations/Pair	1.25
Mean z-score	-1.36
Structure conservation index	0.76
SVM decision value	0.36
SVM RNA-class probability	0.704379
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2060775 102 + 22224390
ACCUGUUGGGACUGGACAAGCUGACCAACGCCUUUGGCCUGCUGCUGCUCUUCCAGGGUAUUGCCAGCUUCAUCGGUCCGCCCAUCGGAGGUGAGUACUC---GC-----
..(((.((((...((((((((((..(((..((((.((...((....))....))))))..))).)))))).....)))).)))).)))..((((....))---))----- ( -34.40)
>DroVir_CAF1 2987 105 + 1
AUCUGCUGGGCCUGGAGAAGCUGACCAAUGCCUUUGGUCUGCUGCUGCUCUUCCAGGGCAUUGCCAGUUUCAUUGGACCGCCCAUUGGCGGUGAGUUGCAUAUGC-----
...(((.....(..(.(((((((..(((((((((.((...((....))....))))))))))).))))))).)..)((((((....)))))).....))).....----- ( -40.60)
>DroPse_CAF1 3187 107 + 1
AUUUGUUGGGGCUGGAGAAGCUGACCAAUGCCUUUGGCCUGCUGCUGCUCUUCCAGGGCAUUGCUAGCUUCAUUGGUCCCCCCAUCGGAGGUAAGUCUUU---CCCUCGU
.......(((((..(.(((((((..(((((((((.((...((....))....))))))))))).))))))).)..))))).......((((.........---.)))).. ( -41.70)
>DroGri_CAF1 2468 102 + 1
AUCUGUUGGGCCUGGACAAGCUGACCAAUGCAUUCGGGCUGCUCUUACUCUUCCAGGGCGUUGCCACGUUAAUUGGCCCGCCCAUAGGCGGUAAGAUUUG---GG-----
........((((((((...((........)).))))))))..((((((((((...(((((..((((.......)))).)))))..))).)))))))....---..----- ( -34.00)
>DroMoj_CAF1 3150 102 + 1
AUCUGCUGGGCCUGGAGAAGCUGACCAAUGCGUUUGGACUGCUGCUGCUCUUCCAGGGCAUCGCUAGCUUCAUCGGACCACCCAUUGGAGGUGAGCUGCA---GU-----
..((((..((((((..(((((((.(..((((.((((((..((....))...)))))))))).).)))))))..)))..(((((....).)))).))))))---).----- ( -35.70)
>DroPer_CAF1 3176 107 + 1
AUUUGUUGGGGCUGGAGAAGCUGACCAAUGCCUUUGGCCUGCUGCUGCUCUUCCAGGGCAUUGCUAGCUUCAUUGGUCCCCCCAUCGGAGGUAAGUCUUU---CCCUCGU
.......(((((..(.(((((((..(((((((((.((...((....))....))))))))))).))))))).)..))))).......((((.........---.)))).. ( -41.70)
>consensus
AUCUGUUGGGCCUGGAGAAGCUGACCAAUGCCUUUGGCCUGCUGCUGCUCUUCCAGGGCAUUGCCAGCUUCAUUGGUCCGCCCAUCGGAGGUAAGUUUUA___GC_____
..(((.(((((((((.(((((((..(((((((((.((...((....))....))))))))))).))))))).))))...))))).)))...................... (-29.04 = -29.60 +   0.56)

alignment

secondary structure

dotplot

Window 8

Location	2,060,775 – 2,060,877
Length	102
Sequences	6
Columns	110
Reading direction	reverse
Mean pairwise identity	80.44
Mean single sequence MFE	-35.83
Consensus MFE	-23.70
Energy contribution	-24.07
Covariance contribution	0.37
Combinations/Pair	1.33
Mean z-score	-1.60
Structure conservation index	0.66
SVM decision value	0.33
SVM RNA-class probability	0.692253
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2060775 102 - 22224390
-----GC---GAGUACUCACCUCCGAUGGGCGGACCGAUGAAGCUGGCAAUACCCUGGAAGAGCAGCAGCAGGCCAAAGGCGUUGGUCAGCUUGUCCAGUCCCAACAGGU
-----..---........((((..(.(((((((((.....((((((((...(((((((....((....))...))..))).))..)))))))))))).).)))).))))) ( -31.50)
>DroVir_CAF1 2987 105 - 1
-----GCAUAUGCAACUCACCGCCAAUGGGCGGUCCAAUGAAACUGGCAAUGCCCUGGAAGAGCAGCAGCAGACCAAAGGCAUUGGUCAGCUUCUCCAGGCCCAGCAGAU
-----((((.(((.....((((((....)))))).((.......)))))))))((((((..(((.(...).((((((.....)))))).)))..)))))).......... ( -36.30)
>DroPse_CAF1 3187 107 - 1
ACGAGGG---AAAGACUUACCUCCGAUGGGGGGACCAAUGAAGCUAGCAAUGCCCUGGAAGAGCAGCAGCAGGCCAAAGGCAUUGGUCAGCUUCUCCAGCCCCAACAAAU
..((((.---.........)))).(.((((((((.....(((((((.(((((((.(((....((....))...)))..))))))).).)))))))))..))))).).... ( -38.40)
>DroGri_CAF1 2468 102 - 1
-----CC---CAAAUCUUACCGCCUAUGGGCGGGCCAAUUAACGUGGCAACGCCCUGGAAGAGUAAGAGCAGCCCGAAUGCAUUGGUCAGCUUGUCCAGGCCCAACAGAU
-----..---...((((....(((....)))(((((.......(((....)))..((((.((((..((.((((......))..)).)).)))).)))))))))...)))) ( -32.70)
>DroMoj_CAF1 3150 102 - 1
-----AC---UGCAGCUCACCUCCAAUGGGUGGUCCGAUGAAGCUAGCGAUGCCCUGGAAGAGCAGCAGCAGUCCAAACGCAUUGGUCAGCUUCUCCAGGCCCAGCAGAU
-----.(---(((.(((((.......)))))((((.(..(((((((.((((((..((((...((....))..))))...)))))).).))))))..).))))..)))).. ( -37.70)
>DroPer_CAF1 3176 107 - 1
ACGAGGG---AAAGACUUACCUCCGAUGGGGGGACCAAUGAAGCUAGCAAUGCCCUGGAAGAGCAGCAGCAGGCCAAAGGCAUUGGUCAGCUUCUCCAGCCCCAACAAAU
..((((.---.........)))).(.((((((((.....(((((((.(((((((.(((....((....))...)))..))))))).).)))))))))..))))).).... ( -38.40)
>consensus
_____GC___AAAAACUCACCUCCGAUGGGCGGACCAAUGAAGCUAGCAAUGCCCUGGAAGAGCAGCAGCAGGCCAAAGGCAUUGGUCAGCUUCUCCAGGCCCAACAGAU
..........................((((((((.....(((((((.(((((((.(((....((....))...)))..))))))).).)))))))))..)))))...... (-23.70 = -24.07 +   0.37)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:55 2006