| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 18,718,564 – 18,718,666 |
| Length | 102 |
| Max. P | 0.847461 |
| Location | 18,718,564 – 18,718,666 |
|---|---|
| Length | 102 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 77.78 |
| Mean single sequence MFE | -24.07 |
| Consensus MFE | -18.16 |
| Energy contribution | -18.61 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.847461 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18718564 102 - 22224390 GGUCAGCUCCUACUCCUUCUGCUGCUCCUAGUCCUCGAUU-----------------UCGGAUUCACUCUUUUAGCCCACCAACUUGGUUGGCAUUUUUGGCUAGACCAGAUGU-UAUUC ((((((((.....................(((((......-----------------..)))))..........(((.(((.....))).)))......)))).))))......-..... ( -23.20) >DroSec_CAF1 19821 102 - 1 GGUCAGCUCCUACUCCUUCUGGUGCUCCUAGUCUGUGAUU-----------------UCGGAUUUACUAUUUUAGCCCACCAACUUGGUUGGCAUUUUUGGCUCGACCAGAUGU-UAUUC ((((((((...........(((((.....((((((.....-----------------.))))))))))).....(((.(((.....))).)))......)))).))))......-..... ( -25.40) >DroYak_CAF1 19414 119 - 1 GGUCAGCUGCUACUC-UCCUGCUGCUCCUCGUCCGCGUUUUUUUUUUUAACUCUAGUUAGGAUUCACUCUUUUAGCCCACCAACUUGGUUGGCAUUUCCGGCUAACCCAGCUUUUUUUUC (((.(((((......-(((((((((.........))(((.........)))...)).)))))............(((.(((.....))).))).....))))).)))............. ( -23.60) >consensus GGUCAGCUCCUACUCCUUCUGCUGCUCCUAGUCCGCGAUU_________________UCGGAUUCACUCUUUUAGCCCACCAACUUGGUUGGCAUUUUUGGCUAGACCAGAUGU_UAUUC ((((((((......................((((.........................))))...........(((.(((.....))).)))......)))).))))............ (-18.16 = -18.61 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:39 2006