Locus 7507

Sequence ID X_DroMel_CAF1
Location 18,718,381 – 18,718,491
Length 110
Max. P 0.500000
window12315

overview

Window 5

Location 18,718,381 – 18,718,491
Length 110
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 84.86
Mean single sequence MFE -36.40
Consensus MFE -27.66
Energy contribution -27.33
Covariance contribution -0.32
Combinations/Pair 1.16
Mean z-score -1.67
Structure conservation index 0.76
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18718381 110 - 22224390
CAGGAGGCGUUAUUUGGCACA---------GCCAAUCGAUUGACUAGUGCAACAGUGUGGGGCAAUGUGGCCAGAGUGUGCGCAAAUACGUAAACAAUCGAUU-GGCGGUCUGCAAAUAC
..(.(((((((....)))...---------(((((((((((((((...((.(((.((.....)).))).))...))).((((......))))..)))))))))-))).)))).)...... ( -36.00)
>DroSec_CAF1 19638 110 - 1
CAGGAGGCGUUAUUUGGCACA---------GCCAAUCGAUUGACUAGUGCAACAGUGUGGGGCAGUGUGGCCAAAGUGUGCGCAAAUACGUAAACAAUCGAUU-GGCGGCUUGCAAAUAC
..(.(((((((....)))...---------(((((((((((((((...((.(((.((.....)).))).))...))).((((......))))..)))))))))-))).)))).)...... ( -37.00)
>DroYak_CAF1 19222 119 - 1
CAGGAGGCGUUAUUUGACACAUCCUAUCGAGCCUAUCGAUUGGCUAGUGCAACAGUGUGGCGUAGUGUGGCCAGAGUGUGCGCAAAUCCCAAAGUAAUCGAUUAGGCGGACUACAAAUA-
.((((.(.(((....))).).)))).....(((((((((((((...(((((.((.(.((((........)))).).))))))).....))).....))))).)))))............- ( -36.20)
>consensus
CAGGAGGCGUUAUUUGGCACA_________GCCAAUCGAUUGACUAGUGCAACAGUGUGGGGCAGUGUGGCCAGAGUGUGCGCAAAUACGUAAACAAUCGAUU_GGCGGACUGCAAAUAC
..(.(((((((....)))............((((((((((((....(((((.((.(.(((..........))).).)))))))...(......)))))))))).))).)))).)...... (-27.66 = -27.33 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:38 2006