Locus 7505

Sequence ID X_DroMel_CAF1
Location 18,713,311 – 18,713,408
Length 97
Max. P 0.945703
window12309 window12310

overview

Window 9

Location 18,713,311 – 18,713,408
Length 97
Sequences 3
Columns 98
Reading direction forward
Mean pairwise identity 86.25
Mean single sequence MFE -34.84
Consensus MFE -20.09
Energy contribution -21.73
Covariance contribution 1.64
Combinations/Pair 1.07
Mean z-score -3.81
Structure conservation index 0.58
SVM decision value 0.50
SVM RNA-class probability 0.761371
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18713311 97 + 22224390
CGUGGGUGUGUGUGUGUGCGUGUGAGCA-UUUUAGACUGAGAUAUCUGCCAACAACAACAAAUACCGAUGCCCACACACAGGCACACACCCACGCAUA
(((((((((((((.((((.(((.(.(((-((.((((........))))..................))))))))).)))).))))))))))))).... ( -39.91)
>DroSec_CAF1 14709 92 + 1
AGUGG-----UGUGUGUGCGUGUGAGCA-UUUUAGACUGAGAUAUCUGCCAACAACAACAAAUACCGAUGCCCACACACAGGCACACACCCACGCUCA
.((((-----.(((((((((((((.(((-((.((((........))))..................))))).)))))....))))))))))))..... ( -30.31)
>DroEre_CAF1 13918 94 + 1
CGUG---GUGUGUGUGUGUGUGCGCGCACAUUUAGACUGAGAUAUCUGCCAACAACAACAUAUACCGAUGGCCAUACACACGCACAC-CCCGCGCACA
((.(---(((((((((((((((.(((((.((((......))))...))).........(((......))))))))))))))))))))-).))...... ( -34.30)
>consensus
CGUGG__GUGUGUGUGUGCGUGUGAGCA_UUUUAGACUGAGAUAUCUGCCAACAACAACAAAUACCGAUGCCCACACACAGGCACACACCCACGCACA
.((((.(((((((.((((.(((.(.(((....((((........))))..........(.......).))))))).)))).))))))).))))..... (-20.09 = -21.73 +   1.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 0

Location 18,713,311 – 18,713,408
Length 97
Sequences 3
Columns 98
Reading direction reverse
Mean pairwise identity 86.25
Mean single sequence MFE -41.97
Consensus MFE -28.88
Energy contribution -31.11
Covariance contribution 2.23
Combinations/Pair 1.06
Mean z-score -4.59
Structure conservation index 0.69
SVM decision value 1.36
SVM RNA-class probability 0.945703
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18713311 97 - 22224390
UAUGCGUGGGUGUGUGCCUGUGUGUGGGCAUCGGUAUUUGUUGUUGUUGGCAGAUAUCUCAGUCUAAAA-UGCUCACACGCACACACACACACCCACG
....((((((((((((..(((((((((((((.((((((((((......))))))))))..........)-))))))))))))....)))))))))))) ( -48.80)
>DroSec_CAF1 14709 92 - 1
UGAGCGUGGGUGUGUGCCUGUGUGUGGGCAUCGGUAUUUGUUGUUGUUGGCAGAUAUCUCAGUCUAAAA-UGCUCACACGCACACACA-----CCACU
.....((((((((((((....((((((((((.((((((((((......))))))))))..........)-))))))))))))))))).-----)))). ( -41.40)
>DroEre_CAF1 13918 94 - 1
UGUGCGCGGG-GUGUGCGUGUGUAUGGCCAUCGGUAUAUGUUGUUGUUGGCAGAUAUCUCAGUCUAAAUGUGCGCGCACACACACACACAC---CACG
((((.(.(..-(((((((((..(((.((((.(..((.....))..).))))((((......))))..)))..))))))))).).).)))).---.... ( -35.70)
>consensus
UGUGCGUGGGUGUGUGCCUGUGUGUGGGCAUCGGUAUUUGUUGUUGUUGGCAGAUAUCUCAGUCUAAAA_UGCUCACACGCACACACACAC__CCACG
.....(((((((((((..((((((((((((..((((((((((......))))))))))............)))))))))))))))))))....)))). (-28.88 = -31.11 +   2.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:34 2006