Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 18,712,810 – 18,712,924 |
Length | 114 |
Max. P | 0.558770 |
Location | 18,712,810 – 18,712,924 |
---|---|
Length | 114 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 76.82 |
Mean single sequence MFE | -46.07 |
Consensus MFE | -23.22 |
Energy contribution | -26.62 |
Covariance contribution | 3.40 |
Combinations/Pair | 1.33 |
Mean z-score | -1.79 |
Structure conservation index | 0.50 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.558770 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18712810 114 - 22224390 GGAGCAGCAGGCGCACCAGCCGCUGGUAGCCCGUACCCAUGGGCAGUGCCAGCGACACGUUGUUAAAGUUGCUGAUGGUAGUGGCUUAGCGACUGCAGUUGGUACU------GAUGGGGA ..(.((((.(((......))))))).)..(((((.((....))((((((((((..((.((((((((.((..(((....)))..))))))))))))..)))))))))------)))))).. ( -52.90) >DroSec_CAF1 14204 114 - 1 GGAGCAGCAGGCGCAUCAGCCGCUGGUAGCCCGUGCCCGUGGGCAAUGCCAGCGACACGUUGUUAAAGUUGCUGAUGGUAGUGGCUUAGCGACUGCAGUUGGUACU------GAUGGGGA ..(.((((.(((......))))))).)..((((((((....)))..(((((((..((.((((((((.((..(((....)))..))))))))))))..)))))))..------.))))).. ( -49.70) >DroEre_CAF1 13425 114 - 1 GGAACAGCAGGCGCACCAGCCACUGGUAGCCCGUGCCCGUGGGCAGUGCCAGCGACACGUUGUUAAAGUUGCUGAUGGUAGUGGCUUAGCGACUGCAGUUGGUACU------GAUGGGGG ......((.(((..(((((...))))).))).)).(((((...((((((((((..((.((((((((.((..(((....)))..))))))))))))..)))))))))------)))))).. ( -51.00) >DroYak_CAF1 13674 114 - 1 GGAGCAGCAGGCGCACCAGCCGCUGGUAGCCCGUGCCCGUGGGCAGUGCCAGCGACACGUUGUUAAAGUUGCUGAUGGUAGUGGCUUAGCGACUGCAGUUGGUACU------GAUGGGGG ..(.((((.(((......))))))).)..((((((((....)))(((((((((..((.((((((((.((..(((....)))..))))))))))))..)))))))))------.))))).. ( -54.20) >DroMoj_CAF1 12491 114 - 1 GCAGCAUGAGACGCGCCACC----UGUAGA--GCAGCCGCGGGCAGCGCCUGCGAUACGUUGUUAAAGAUGCUGAUGGAAUGGGCUCACCGACUGCACAUGAUGAUAGCCCACAUGCGGA ...(((((.......(((.(----.(((.(--((((((((((((...)))))))....)))))).....))).).)))..((((((((.((........)).)))..))))))))))... ( -36.20) >DroPer_CAF1 15077 93 - 1 AUGCGAUUAGGCGCGCCAG---------------------GGGCAGCGCCGCUGGCACGUUGUUAAAGCUGCUGAUGAUAGUGACUGAGGGACUGCAGCUGGUACU------GAUGGGGG .(.(.((((((((.(((((---------------------.(((...))).))))).)))......((((((......................))))))....))------))).).). ( -32.45) >consensus GGAGCAGCAGGCGCACCAGCCGCUGGUAGCCCGUGCCCGUGGGCAGUGCCAGCGACACGUUGUUAAAGUUGCUGAUGGUAGUGGCUUAGCGACUGCAGUUGGUACU______GAUGGGGA ......((((.(((...((((((((.((((((((....)))))).....(((((((...........))))))).)).))))))))..))).))))........................ (-23.22 = -26.62 + 3.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:33 2006