Locus 7500

Sequence ID X_DroMel_CAF1
Location 18,691,505 – 18,691,608
Length 103
Max. P 0.818658
window12303

overview

Window 3

Location 18,691,505 – 18,691,608
Length 103
Sequences 4
Columns 105
Reading direction forward
Mean pairwise identity 83.33
Mean single sequence MFE -36.38
Consensus MFE -29.59
Energy contribution -29.90
Covariance contribution 0.31
Combinations/Pair 1.08
Mean z-score -1.80
Structure conservation index 0.81
SVM decision value 0.67
SVM RNA-class probability 0.818658
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18691505 103 + 22224390
AGAUCUGCAGAGGAUCUCCUCCAGGGGGUGGCAGUGGGGUGGGCCGAGGCUAUGUGGCCCCCUAAACUGAU--ACGAUCAGUUAUAAAUAGAGCCAUAGGCCCAA
....(((..((((....)))))))((((((((....(((.((((((........))))))))).(((((((--...))))))).........)))))...))).. ( -39.20)
>DroSec_CAF1 23777 105 + 1
AGAUCUCCAGAGAAUCUCCUCCAGGGGGUGGCAGUGGGGUGGCCCGAGGCUUGGUGGCCCCCUGAACUGAUAAACGAUCGGUUAUAAAUAGAGCCAUAGGCCCAA
.........(((......)))..(((.(((((((.(((((.(((........))).))))))).(((((((.....))))))).........)))))...))).. ( -36.90)
>DroSim_CAF1 6064 105 + 1
AGAUCUCCAGAGAAUCUCCUCCAGGGGGUGGCAGUGGGGUGGCCCGAGGCUUGGUGGCCCCCUGAACUGAUAAACGAUCGGUUAUAAAUAGAGCCAUAGGCCCAA
.........(((......)))..(((.(((((((.(((((.(((........))).))))))).(((((((.....))))))).........)))))...))).. ( -36.90)
>DroEre_CAF1 12967 81 + 1
AGAUCUGCAGCGGAUCUCCUCCAGGGGGUGGCAGUGGGGUG---------------GCCCCCUAAGCUGAUAAACGAUCGGUUAUAAAUAGAGCCA---------
.((((..(((((((.....)))(((((((.((......)).---------------)))))))..))))......))))((((........)))).--------- ( -32.50)
>consensus
AGAUCUCCAGAGAAUCUCCUCCAGGGGGUGGCAGUGGGGUGGCCCGAGGCUUGGUGGCCCCCUAAACUGAUAAACGAUCGGUUAUAAAUAGAGCCAUAGGCCCAA
.............((((((....))))))(((((.(((((.(((........))).))))))).(((((((.....))))))).........))).......... (-29.59 = -29.90 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:28 2006