Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 323,280 – 323,380 |
Length | 100 |
Max. P | 0.806467 |
Location | 323,280 – 323,380 |
---|---|
Length | 100 |
Sequences | 3 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 93.33 |
Mean single sequence MFE | -28.37 |
Consensus MFE | -24.39 |
Energy contribution | -25.50 |
Covariance contribution | 1.11 |
Combinations/Pair | 1.04 |
Mean z-score | -2.36 |
Structure conservation index | 0.86 |
SVM decision value | 0.63 |
SVM RNA-class probability | 0.806467 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 323280 100 - 22224390 GCCGUUAGAAGCCGGCUUUCCCUUUUUUAGGCAAUCGAUUGCCGAAUAUCAAUUUACAAAACGUAACGAGCCGAAACGGAAAUCCUUUCGGUUUCUUCCG ..((..((((((((((((...........(((((....)))))..........((((.....)))).)))))((((.((....)))))))))))))..)) ( -30.40) >DroSim_CAF1 327 100 - 1 GCCGUUAGAAGCCGGCUUUCUCUUUUUUAGGCAAUCGAUUGCCGAAUAUCAAUUUACAAAAAGGAACGAACCGAAACGGAAAUCCUUUCGGUUUCUUCCG ((((........)))).............(((((....)))))...................((((.(((((((((.((....))))))))))).)))). ( -31.20) >DroYak_CAF1 485 99 - 1 GCCGUUAGAAGUCGGCUUUCCCUUUUUUGGGCAAUCGAUUGCAGAAUAUCAAUUUACAA-ACGGAACGAAACGAAACGGAAAUCCUUUCGGUUUCCUCCG ((((........))))...(((......))).....(((........))).........-.((((..(((((((((.((....)))))).))))).)))) ( -23.50) >consensus GCCGUUAGAAGCCGGCUUUCCCUUUUUUAGGCAAUCGAUUGCCGAAUAUCAAUUUACAAAACGGAACGAACCGAAACGGAAAUCCUUUCGGUUUCUUCCG ((((........)))).............(((((....)))))...................((((.(((((((((.((....))))))))))).)))). (-24.39 = -25.50 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:14 2006