Locus 7499

Sequence ID X_DroMel_CAF1
Location 18,691,177 – 18,691,297
Length 120
Max. P 0.631873
window12302

overview

Window 2

Location 18,691,177 – 18,691,297
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 80.06
Mean single sequence MFE -56.42
Consensus MFE -32.22
Energy contribution -32.17
Covariance contribution -0.05
Combinations/Pair 1.26
Mean z-score -1.87
Structure conservation index 0.57
SVM decision value 0.20
SVM RNA-class probability 0.631873
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18691177 120 - 22224390
CGGGCAAGGUGAUCUUGGUGACCGGAGCCGGGGCCGGUAUUGGCCAGGCGUUGGUCAAGCAGUUGGCCUCCGCGGGUGCCACCGUCAUCGCAGUGGCCAGGAAGCCAGAGCAGCUCCAGC
.((((..((((((..((((.(((...((.((((((((..((((((((...))))))))....)))))))).)).)))))))..))))))((..((((......))))..)).)).))... ( -53.20)
>DroVir_CAF1 9183 120 - 1
AAAACAAGGUGAUACUGGUGACCGGCGCCGGUGCUGGCAUUGGCAAUGCUCUGGUCAAGCAGUUGGCCAGCGCGGGCGCCACUGUCAUCGCGGUGGCACGCAGCGAGGCGCAGCUAAAGG
.......(((.((....)).))).(((((..(((((.(....((..(((.((((((((....)))))))).))).))((((((((....))))))))..)))))).)))))......... ( -53.20)
>DroGri_CAF1 14243 120 - 1
GCAACAAGGUGAUACUGGUGACCGGCGCCGGUGCUGGCAUUGGCAAUGCCCUGGUCAAACAGUUGGCCAGCGCCGGUGCCACAGUCAUCGCGGUGGCCCGCAACGAGGCACAGCUCAAGG
........(((...((((((((.(((((((((((((((...(((...)))(((......)))...)))))))))))))))...))))))((((....))))....)).)))......... ( -57.50)
>DroMoj_CAF1 12400 120 - 1
AGAACAAGGUGAUCCUAGUGACCGGCGCCGGGGCUGGCAUUGGUAAUGCUCUGGUCAAGCAGCUAGCCGGCGCUGGCGCCACGGUCAUUGCGGUGGCGCGCAGCGAGGCGCAGCUGAAGG
.((.((..(((...((((((.(((((......)))))))))))...)))..)).))...(((((.(((..((((((((((((.((....)).))))))).))))).)))..))))).... ( -59.30)
>DroAna_CAF1 12417 120 - 1
AGGGCAAGGUGAUCCUGGUGACCGGCGCCGGAGCCGGCAUUGGGCAGGCUCUGGUCAAGCAGCUGGCUAGCGUGGGAGCCACCGUGAUAGCGGUGGCCCGGAAGGAGGCCCAGCUGGAGG
..(((..(((.((....)).))).(((((((((((.((.....)).)))))))))...)).)))..(((((.((((.((((((((....))))))))((....))...)))))))))... ( -62.70)
>DroPer_CAF1 11947 120 - 1
AAAACAAGGUGAUCUUGGUGACGGGCGCGGGUGCGGGCAUCGGCCAAGCCCUGGUCAAAGAGCUGGCAGGCGCGGGAGCCACGGUCAUAGCAGUGGCCCGCAGCGAGGCCCAGCUCAAGG
.........(((((..(....)((((((.((((....)))).))...)))).)))))..((((((((..((((((..(((((.((....)).))))))))).))...).))))))).... ( -52.60)
>consensus
AGAACAAGGUGAUCCUGGUGACCGGCGCCGGUGCUGGCAUUGGCAAUGCUCUGGUCAAGCAGCUGGCCAGCGCGGGAGCCACCGUCAUCGCGGUGGCCCGCAACGAGGCGCAGCUCAAGG
......((.((...((((((.(((((......)))))))))))....((.(((((((......))))))).))....(((((.((....)).))))).............)).))..... (-32.22 = -32.17 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:27 2006