Locus 7497

Sequence ID X_DroMel_CAF1
Location 18,686,102 – 18,686,197
Length 95
Max. P 0.500000
window12298

overview

Window 8

Location 18,686,102 – 18,686,197
Length 95
Sequences 4
Columns 95
Reading direction forward
Mean pairwise identity 88.07
Mean single sequence MFE -39.75
Consensus MFE -32.89
Energy contribution -34.45
Covariance contribution 1.56
Combinations/Pair 1.07
Mean z-score -1.34
Structure conservation index 0.83
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18686102 95 + 22224390
CCACUGCAGCCGGUGCAAUGGCGGCUGCAGGAGCUGCUUCGGUGAUCACGACAAUGGUGCCAACACCAGGAGCCUCCGGAUCAGGCGUGGCAGCC
...(((((((((.(.....).)))))))))..((((((.((.(((((.......(((((....)))))((.....)).)))))..)).)))))). ( -43.80)
>DroSec_CAF1 18394 95 + 1
CCACUGCAGCCGGUGCAAUGGCGGCUGCAGGAGGUGCUUCGGUGAUCACGACAGUGGUGCCAACACCAGGAGCCUCCGGAUCAGGCGGAGCAGCC
...(((((((((.(.....).)))))))))..(.(((((((.(((((.......(((((....)))))((.....)).)))))..))))))).). ( -43.10)
>DroEre_CAF1 7556 95 + 1
CCACUGGAGCCGGAGCUAUGGCGACUGCAGGAGCUGCUUCGGUGAUCACGGCAGUGAUGCCAACACCAGGAGUCUCCGGACCAAGUGGGGCAGCA
(((((((..((((((((.((((((..((((...)))).)))........((((....))))....)))..)).)))))).)).)))))....... ( -39.90)
>DroYak_CAF1 5506 95 + 1
UCACUGCACCCGGACCAAUGGCGACUGCAGGAGCUGCUUCGGUUAUCACGACCGUGAUGCCAACACCAGGAGCCUCCGGAUCAGGUGGGCCAGCA
(((((....(((((.....(((..(((..((((...))))(((.(((((....)))))))).....)))..))))))))....)))))....... ( -32.20)
>consensus
CCACUGCAGCCGGAGCAAUGGCGACUGCAGGAGCUGCUUCGGUGAUCACGACAGUGAUGCCAACACCAGGAGCCUCCGGAUCAGGCGGGGCAGCA
...(((((((((.........)))))))))..(((((((((((.(((((....))))))))....((.((.....)))).......)))))))). (-32.89 = -34.45 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:23 2006