Locus 7494

Sequence ID X_DroMel_CAF1
Location 18,681,997 – 18,682,091
Length 94
Max. P 0.796232
window12295

overview

Window 5

Location 18,681,997 – 18,682,091
Length 94
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 76.81
Mean single sequence MFE -40.43
Consensus MFE -23.30
Energy contribution -25.38
Covariance contribution 2.09
Combinations/Pair 1.33
Mean z-score -1.76
Structure conservation index 0.58
SVM decision value 0.60
SVM RNA-class probability 0.796232
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18681997 94 - 22224390
AUGGAGUUCUCCCGGCAGCAGGUCGGAGCAACUGUUCUAUGCUGCCUUUUGGGCAGGUGGCCUGACCCUAGGCUACCACUGGCUGACCGACAAG
..(((....)))(((((((.(((.(((((....)))))....((((.....))))(((((((((....)))))))))))).)))).)))..... ( -39.40)
>DroSec_CAF1 14335 94 - 1
AUGGAGUUCUCCGGGCAGCAGGUCGGAGCAACUGCUCUAUGCUGCCUUUUGGGCAGGUGGCCUGACCCUGGGCUACCACUGGCUGACCGACAAG
.(((.((((...((((((((....(((((....))))).))))))))...)))).((((((((......)))))))).........)))..... ( -42.40)
>DroEre_CAF1 3583 94 - 1
AUGGAGUACCCCCGGUAGCAGGUCGGAGCAACUGCUCUAUGCUGCCAUCUGGGCAGGUGGCCUGUCCCUGGGCUAUCACUGGCUGACCGACAAG
.(((.......((((..((((((((((((....)))))...(((((.....)))))..)))))))..))))((((....))))...)))..... ( -38.70)
>DroYak_CAF1 1558 94 - 1
AUGGAGUUCACCGGGCAGCAGAUCGGAGCAACUGCUCUAUGCUGCCUUUUGGGCAGGUGGCCUGACCCUGGGCUACCACUGGCUGACCGACAGG
.(((.(((((..((((((((....(((((....))))).))))))))..))))).((((((((......)))))))).........)))..... ( -44.00)
>DroAna_CAF1 3540 94 - 1
AUGGAGCCACCCUGACAGUCGGCUGGAGCAGCUCCUGUACGCCACCUACUGGGCCGGAGGUCUGGCUCUGGCCUACCAUUGGCUGGGCCCCAAG
.(((.(((......((((..(((((...))))).))))..((((.....((((((((((......))))))))))....))))..))).))).. ( -40.90)
>DroPer_CAF1 1582 94 - 1
AUGGAGUUCGCCCGGGAGCAAAGCUGAGAUGUUCCUGUACGGCGCAUUCUGGGCCGGCGGCCUGGGACUAGGCUACUUUUGGCUGACUCAGCGA
...(((((.(((((((((((.........))))))))..((((.(.....).))))(..(((((....)))))..)....))).)))))..... ( -37.20)
>consensus
AUGGAGUUCCCCCGGCAGCAGGUCGGAGCAACUGCUCUAUGCUGCCUUCUGGGCAGGUGGCCUGACCCUGGGCUACCACUGGCUGACCGACAAG
..((.((((....(((((((....(((((....))))).)))))))....)))).(((((((((....))))))))).........))...... (-23.30 = -25.38 +   2.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:21 2006