| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 18,679,596 – 18,679,716 |
| Length | 120 |
| Max. P | 0.550836 |
| Location | 18,679,596 – 18,679,716 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 93.89 |
| Mean single sequence MFE | -49.10 |
| Consensus MFE | -42.77 |
| Energy contribution | -42.33 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.87 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.550836 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18679596 120 - 22224390 CAGCUUGCUGAUGGUCUCCGUCUUCAUGGUCUCCAUGGGCUUGGGCGAGGCCACUGAAUUGGCUCGCACCAGGCUCCUACCCUUGCUGCGGUUCGAGUUGCGCGAAGUCAUCAGCAUGGA ...(.(((((((((..(((((..((((((...))))))(((((((((((.(((......)))))))).))))))((..((((.....).)))..))...))).))..))))))))).).. ( -48.60) >DroSim_CAF1 5138 120 - 1 CAGUUUGCUGAUGGUCUCGGUCUUUAUGGUCUCCAUGGGCUUUGGCGAGGCCACUGAAUUGGCUCGCACCAGACUCCUACCCUUGCUGCGGUUCGAGUUGCGCGAGGUCAUCAGCAUGGA .....((((((((..((((....((((((...))))))((....(((((.(((......))))))))....(((((..((((.....).)))..))))))).))))..)))))))).... ( -48.30) >DroYak_CAF1 4984 120 - 1 CAGCUUGCUGAUCGUCUCCGUCUUCGUGAUCUCCAUGGGCUUGGGCGAGGCCACUGAAUUGGCUCGCACCAGGCUUCUACCCUUGCUGCGGUUGGAGUUGCGCGAGGUCAUCAGCAUGGA ...(.(((((((.......(.(((((((..(((((.(((((((((((((.(((......)))))))).))))))))..((((.....).))))))))...))))))).)))))))).).. ( -50.41) >consensus CAGCUUGCUGAUGGUCUCCGUCUUCAUGGUCUCCAUGGGCUUGGGCGAGGCCACUGAAUUGGCUCGCACCAGGCUCCUACCCUUGCUGCGGUUCGAGUUGCGCGAGGUCAUCAGCAUGGA .....(((((((((((((((..((((((.....))))))..)))(((((.(((......))))))))...))))......((((((.((((......)))))))))).)))))))).... (-42.77 = -42.33 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:17 2006