Locus 7491

Sequence ID X_DroMel_CAF1
Location 18,679,396 – 18,679,516
Length 120
Max. P 0.774509
window12290

overview

Window 0

Location 18,679,396 – 18,679,516
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 93.89
Mean single sequence MFE -53.03
Consensus MFE -46.87
Energy contribution -45.67
Covariance contribution -1.21
Combinations/Pair 1.18
Mean z-score -2.14
Structure conservation index 0.88
SVM decision value 0.54
SVM RNA-class probability 0.774509
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18679396 120 + 22224390
GGGACGUCGAUCUGUAUCGUCUGUUCCGUGCGGUGCAGAAGCGAGGUGGUUACAACCGCGUUACCUCGCAGAAUCAGUGGAAGCUCAUCGCCAUGCGCCUGGGCUUCACGCCCUGCACUG
((((((.((((....)))).).)))))...((((((((..((((((((((....))).....))))))).......(((((((((((.(((...)))..)))))))).))).)))))))) ( -51.40)
>DroSim_CAF1 4938 120 + 1
GGGACGUGGAUCUGUACCGUCUCUUCCGUGCGGUGCAGAAGCGAGGUGGUUACAACCGCGUUACCUCGCAGAAUCAGUGGAAGCUCAUCGCCAUGCGCCUGGGCUUCACGCCCUGCACGG
((((((.(........)))))))..((((((((.((....((((((((((....))).....))))))).......(((.(((((((.(((...)))..)))))))))))).)))))))) ( -52.80)
>DroYak_CAF1 4784 120 + 1
GCGAUGUGGAUCUGUACCGCCUCUUCCGUGCGGUGCAGAAGCGAGGUGGCUACAACCGCGUCACCUCGCAGAAUCAGUGGAAGCUCAUUGCCAUGCGCCUGGGCUUUACGCCCUGCACGG
..((.((((.......)))).))..((((((((((((...((((((((((.........)))))))))).....((((((....))))))...)))))).((((.....)))).)))))) ( -54.90)
>consensus
GGGACGUGGAUCUGUACCGUCUCUUCCGUGCGGUGCAGAAGCGAGGUGGUUACAACCGCGUUACCUCGCAGAAUCAGUGGAAGCUCAUCGCCAUGCGCCUGGGCUUCACGCCCUGCACGG
(((.(((.(((((((((((((......).)))))))))).((((((((((.........))))))))))....))....((((((((.(((...)))..))))))))))))))....... (-46.87 = -45.67 +  -1.21)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:16 2006