Locus 749

Sequence ID X_DroMel_CAF1
Location 2,048,715 – 2,048,824
Length 109
Max. P 0.547502
window1214

overview

Window 4

Location 2,048,715 – 2,048,824
Length 109
Sequences 5
Columns 113
Reading direction forward
Mean pairwise identity 72.03
Mean single sequence MFE -35.23
Consensus MFE -9.94
Energy contribution -12.38
Covariance contribution 2.44
Combinations/Pair 1.32
Mean z-score -1.67
Structure conservation index 0.28
SVM decision value 0.03
SVM RNA-class probability 0.547502
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2048715 109 + 22224390
UUCGCUUUCUACAAAUAUUGUAAUUGAUACUUCAUCAUCAGAUGCGGCAUGACAUGGGCAUGCUGUCGCAUCUUCAGGUAUUGAUAUUUUCAGAUCUGUUGGUUCCAC--C--
..................((.(((..(((..(((((...((((((((((.(.(((....))))))))))))))...)))..(((.....)))))..)))..))).)).--.-- ( -24.60)
>DroSec_CAF1 15195 109 + 1
UUCGCUUUCUGCAAAUAUAGUAAUUGAUACUUCAUCACCAGAUGCGUCCGGACAUGGGCAGGCUGGGGCAUCUUCGGGUAUUGAUAAUUUCAGAUCCGUUGGUGCCAA--C--
...((.....))............((((.....))))((((....(((((....)))))...))))((((((..(((((.((((.....)))))))))..))))))..--.-- ( -33.50)
>DroSim_CAF1 12985 109 + 1
UUCGCUUUCUGUAAAUAUAGUAAUAGAUACUUCAUCACCAGAUGCGUCCGGACAUGGGCAGACUGGGGCACCUUCGGGUAUUGAUAAUUUCAGAUCCGUUGGUGCCAA--C--
...((..((((.......((((.....)))).......)))).))(((((....))))).......((((((..(((((.((((.....)))))))))..))))))..--.-- ( -35.54)
>DroEre_CAF1 15721 113 + 1
UCCGAUUUCCAUCAACAUUGGCAGUGGUACCACACCACCAGAUCCGACAUGACAUUGUGCGGCUGGCACAGCUCCAGGUGUUGAUAGUUCCAGAACUUCCGGCUGCGGCUCAA
.(((....(((((((((((((.((((((.....))).((((..((((((......))).)))))))....)))))).))))))))((((....))))...))...)))..... ( -31.70)
>DroYak_CAF1 15625 111 + 1
UCCGGUGUCCUGCAACACCGGAAGUGGUACUGCAUCACCAGAUGCCGCAUGACAUGGUGAGGCUGGCGCAUCUCCAGGUCUGCAUAGCUGCAGAGCCGUGGUCGCCAG--CAA
((((((((......)))))))).(((((((((......))).)))))).............(((((((.....(((((((((((....)))))).)).))).))))))--).. ( -50.80)
>consensus
UUCGCUUUCUACAAAUAUAGUAAUUGAUACUUCAUCACCAGAUGCGGCAUGACAUGGGCAGGCUGGCGCAUCUUCAGGUAUUGAUAAUUUCAGAUCCGUUGGUGCCAA__C__
.........................(((.....))).((((....((((......))))...)))).(((((..(((((.((((.....)))))))))..)))))........ ( -9.94 = -12.38 +   2.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:52 2006