Locus 7483

Sequence ID X_DroMel_CAF1
Location 18,668,205 – 18,668,297
Length 92
Max. P 0.717435
window12273

overview

Window 3

Location 18,668,205 – 18,668,297
Length 92
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 80.43
Mean single sequence MFE -31.46
Consensus MFE -18.68
Energy contribution -18.44
Covariance contribution -0.24
Combinations/Pair 1.15
Mean z-score -1.94
Structure conservation index 0.59
SVM decision value 0.39
SVM RNA-class probability 0.717435
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18668205 92 - 22224390
GGAAUCGCGAUCCCCACUUGGGCGGUCCUUAAUUACGCGAAGGGAGUGCC-UCCCGCCAGGCAAUUGCUCC---------------------------CCGCACAAGAAUUCCAAUACAA
((((((..(((((((....))).)))).........(((..(((((((((-(......))))....)))))---------------------------))))....).)))))....... ( -32.00)
>DroSec_CAF1 13271 92 - 1
GGGAACGCGAUCCCCAAUUGGGCGGUCCACAAUUAUGCGAAGGGUGUGCC-UCCGUCCAGGCAAUUGCUCC---------------------------CCGCACAUGAAUUCCAAAACAA
.((((..((((((((....))).))))........((((..((((.((((-(......)))))...)))).---------------------------.))))...)..))))....... ( -29.50)
>DroSim_CAF1 11365 92 - 1
GGGAACGCGAUCCCCACUUGGGCGGUCCUCAAUUAUGCGAAGGGUGUGCC-UCCGUCCAGGCAAUUGCUCC---------------------------CCGCACAUGAAUUCCAAAACAA
.((((..((((((((....))).))))........((((..((((.((((-(......)))))...)))).---------------------------.))))...)..))))....... ( -29.50)
>DroEre_CAF1 13479 92 - 1
GGGACCGCGAUCCCCACUUGGGCGGUCCCCAAUUACGCGAAGGGAGUUCC-GCCGACCAGGCAAUUGCUCC---------------------------CUGCACAAGAAUUUCAAAACAA
((((((((...((......)))))))))).......((..(((((((...-(((.....)))....)))))---------------------------)))).................. ( -35.00)
>DroYak_CAF1 13513 120 - 1
GGGACCGCGAUCCCCACUUGGGUGGUCCCCAAUUAAGCGAAGGGAGUGCCCCCCGACCAGGCAAUUGCUCCACCACUCCCCCCCCCCCCUCCCUUCACCGGCACAAGAAUUCCAAAACAA
(((((((.....(((....)))))))))).........((((((((((((.........))))..((......)).............))))))))........................ ( -31.30)
>consensus
GGGAACGCGAUCCCCACUUGGGCGGUCCCCAAUUACGCGAAGGGAGUGCC_UCCGACCAGGCAAUUGCUCC___________________________CCGCACAAGAAUUCCAAAACAA
((((....(((((((....))).)))).........(((..((..(.......)..)).(((....)))..............................))).......))))....... (-18.68 = -18.44 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:01 2006