Locus 7482

Sequence ID X_DroMel_CAF1
Location 18,666,547 – 18,666,660
Length 113
Max. P 0.533551
window12272

overview

Window 2

Location 18,666,547 – 18,666,660
Length 113
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 88.99
Mean single sequence MFE -31.40
Consensus MFE -26.34
Energy contribution -26.40
Covariance contribution 0.06
Combinations/Pair 1.16
Mean z-score -1.37
Structure conservation index 0.84
SVM decision value 0.00
SVM RNA-class probability 0.533551
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18666547 113 - 22224390
GUUCAAAACUGUCGACUCGUCGGUGUGGGCCAAGUUACUGCGCCCCUAUCACCACAGUCGCCAA-U------AACAAUAGCAGUAGCAGUAACUGUUGCAGUAACAGUAACAGUACCCAG
.......(((((.((((.((.((((.((((((......)).))))....))))))))))((...-.------.......))....))))).((((((((.......))))))))...... ( -32.80)
>DroSec_CAF1 11559 110 - 1
GUUCAAAACUGUCGACUCGUCGGUGUGGGCCAAGUUACUGCGCCCCCAUC---ACAGUCGCCAA-U------AACAAUAGCAGUAGCAGUAGCUGUUGCAGUAACAGUAACAGUAACCAG
.......((((((((((.((.((((.((((((......)).)))).))))---)))))))....-.------.......)))))....((.((((((((.......)))))))).))... ( -33.30)
>DroSim_CAF1 9683 110 - 1
GUUCAAAACUGUCGACUCGUCGGUGUGGGCCAAGUUACUGCGCCCCUAUC---ACAGUCGCCAA-U------AACAAUAGCAGUAGCAGUAGCUGUUGCAGUAACAGUAACAGUAACCAG
.......((((((((((.((.((((.((((((......)).)))).))))---)))))))....-.------.......)))))....((.((((((((.......)))))))).))... ( -31.60)
>DroYak_CAF1 11760 117 - 1
GUUCAAAACUGUCGCGUCGUCGGUGUGGGCCAAGUUACUGCGCCCCUAUC---ACACUCCCCAAAUAACAAUAACAAUAACAGUAACAGUAACAGUAGCUGUAGCUGUAGCAGUAACCAG
.......(((((......((.((((.((((((......)).)))).))))---))........................(((((.(((((.......))))).))))).)))))...... ( -27.90)
>consensus
GUUCAAAACUGUCGACUCGUCGGUGUGGGCCAAGUUACUGCGCCCCUAUC___ACAGUCGCCAA_U______AACAAUAGCAGUAGCAGUAACUGUUGCAGUAACAGUAACAGUAACCAG
.......((((((((((.((.((((.((((((......)).)))).))))...)))))))...................)))))....((.((((((((.......)))))))).))... (-26.34 = -26.40 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:00 2006