Locus 7481

Sequence ID X_DroMel_CAF1
Location 18,666,421 – 18,666,512
Length 91
Max. P 0.913053
window12270 window12271

overview

Window 0

Location 18,666,421 – 18,666,512
Length 91
Sequences 3
Columns 91
Reading direction forward
Mean pairwise identity 92.67
Mean single sequence MFE -36.91
Consensus MFE -32.36
Energy contribution -32.81
Covariance contribution 0.45
Combinations/Pair 1.04
Mean z-score -2.21
Structure conservation index 0.88
SVM decision value 0.63
SVM RNA-class probability 0.805013
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18666421 91 + 22224390
UGUUAACAGUGAAACCCAUCCGCUCCGCUCCAGGCCCCAAGAUCGGGAGAGUAAUGAGCGGAGCGGUUCGGUUCGGAUUGGAUGUGAGUGU
......((((..((((...(((((((((((...(((((......)))...))...)))))))))))...))))...))))........... ( -34.90)
>DroSec_CAF1 11428 91 + 1
UGUUAACAGUGAAUCCCAUCCGCUCCGCUCUAGGCCCCAAGAUCGAGAGAGCGCUGAGCGGAGCGGUUCGAUUGGGAUGGGAUGUGAGUGG
.....(((....((((((.(((((((((((.((((.......((....)))).)))))))))))))......))))))....)))...... ( -37.91)
>DroSim_CAF1 9552 91 + 1
UGUUAACAGUGAAUCCCAUCCGCUCCGCUCUAGGCCCCAAGAUCGAGAGAGCGCUGAGCGGAGCGGUUCGAUUGGGAUGGGAUGUGAGUGG
.....(((....((((((.(((((((((((.((((.......((....)))).)))))))))))))......))))))....)))...... ( -37.91)
>consensus
UGUUAACAGUGAAUCCCAUCCGCUCCGCUCUAGGCCCCAAGAUCGAGAGAGCGCUGAGCGGAGCGGUUCGAUUGGGAUGGGAUGUGAGUGG
.....(((....((((((.(((((((((((...((.......((....))))...)))))))))))......))))))....)))...... (-32.36 = -32.81 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 1

Location 18,666,421 – 18,666,512
Length 91
Sequences 3
Columns 91
Reading direction reverse
Mean pairwise identity 92.67
Mean single sequence MFE -37.73
Consensus MFE -31.17
Energy contribution -32.17
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -4.45
Structure conservation index 0.83
SVM decision value 1.09
SVM RNA-class probability 0.913053
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18666421 91 - 22224390
ACACUCACAUCCAAUCCGAACCGAACCGCUCCGCUCAUUACUCUCCCGAUCUUGGGGCCUGGAGCGGAGCGGAUGGGUUUCACUGUUAACA
.................(((((.(.(((((((((((.......(((((....)))))....))))))))))).).)))))........... ( -35.20)
>DroSec_CAF1 11428 91 - 1
CCACUCACAUCCCAUCCCAAUCGAACCGCUCCGCUCAGCGCUCUCUCGAUCUUGGGGCCUAGAGCGGAGCGGAUGGGAUUCACUGUUAACA
........((((((((((....)....(((((((((((.((((.(........))))))).))))))))))))))))))............ ( -39.00)
>DroSim_CAF1 9552 91 - 1
CCACUCACAUCCCAUCCCAAUCGAACCGCUCCGCUCAGCGCUCUCUCGAUCUUGGGGCCUAGAGCGGAGCGGAUGGGAUUCACUGUUAACA
........((((((((((....)....(((((((((((.((((.(........))))))).))))))))))))))))))............ ( -39.00)
>consensus
CCACUCACAUCCCAUCCCAAUCGAACCGCUCCGCUCAGCGCUCUCUCGAUCUUGGGGCCUAGAGCGGAGCGGAUGGGAUUCACUGUUAACA
........(((((((((..........(((((((((...(((((.........)))))...))))))))))))))))))............ (-31.17 = -32.17 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:59 2006