Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,046,744 – 2,046,838 |
Length | 94 |
Max. P | 0.986973 |
Location | 2,046,744 – 2,046,838 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 74.92 |
Mean single sequence MFE | -30.92 |
Consensus MFE | -21.68 |
Energy contribution | -23.04 |
Covariance contribution | 1.36 |
Combinations/Pair | 1.14 |
Mean z-score | -1.81 |
Structure conservation index | 0.70 |
SVM decision value | 1.46 |
SVM RNA-class probability | 0.955656 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2046744 94 + 22224390 UUAAAUAGCAGGCGCUGGCAGAGCAAACGACCCG----UACGGACAGCAUGAGUCCCAGGGCUUUUGGGUCGUCCUGUCCACACCCCCCACCCCCCCG .......(((((.(((.....)))..((((((((----(....)).....(((((....)))))..)))))))))))).................... ( -24.90) >DroSec_CAF1 13418 89 + 1 UUAAAUAGCAGGCGCUGGCAGGGCAAACGACCCG----CCCGGACAGCAUGAGUCCCCGGGCUUUUGGGUCGUCCUGC----ACA-CCCCACCCCCCA ..........((.(.(((((((....((((((((----(((((...((....))..))))))....))))))))))))----.))-.)))........ ( -35.30) >DroSim_CAF1 11104 89 + 1 UUAAAUAGCAGGCGCUGGCAGAGCAAACGACCCG----CCCGGACAGCAUGAGUCCCCGGGCUUUUGGGUCGUCCUGC----AGC-CCCACCCCCCCA ..........((.((((.(((.(...((((((((----(((((...((....))..))))))....))))))))))))----)))-.))......... ( -35.20) >DroEre_CAF1 13436 72 + 1 UUAAAUAGAAGGCGCUGGCAGAGCAAACGACCCG----CCCGGACACUAA--AUGUCCGGGCUUUUGGGUCCUCCC--------C-A----------- ..........((.(((.....)))....((((((----((((((((....--.)))))))))....)))))....)--------)-.----------- ( -29.50) >DroYak_CAF1 13593 80 + 1 UUAAAUAGAAGGCGCUGGCAGAGCAAACGACCCGCCCGCCCGGAUAGUAA--AUGUCCGGGCUUUUGGCUCCUCCUGC----UUC-C----------- .....(((.(((.((((((.(..(....)..).))).(((((((((....--.)))))))))....))).))).))).----...-.----------- ( -29.70) >consensus UUAAAUAGCAGGCGCUGGCAGAGCAAACGACCCG____CCCGGACAGCAUGAGUCCCCGGGCUUUUGGGUCGUCCUGC____ACC_CCC__CCCCCC_ .......(((((.(((.....)))..((((((((....(((((.............)))))....))))))))))))).................... (-21.68 = -23.04 + 1.36)
Location | 2,046,744 – 2,046,838 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 74.92 |
Mean single sequence MFE | -38.38 |
Consensus MFE | -20.70 |
Energy contribution | -21.90 |
Covariance contribution | 1.20 |
Combinations/Pair | 1.09 |
Mean z-score | -2.33 |
Structure conservation index | 0.54 |
SVM decision value | 2.06 |
SVM RNA-class probability | 0.986973 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2046744 94 - 22224390 CGGGGGGGUGGGGGGUGUGGACAGGACGACCCAAAAGCCCUGGGACUCAUGCUGUCCGUA----CGGGUCGUUUGCUCUGCCAGCGCCUGCUAUUUAA .....((((((.((((((((.(((((((((((....((....((((.......)))))).----.))))))))....)))))).))))).)))))).. ( -36.20) >DroSec_CAF1 13418 89 - 1 UGGGGGGUGGGG-UGU----GCAGGACGACCCAAAAGCCCGGGGACUCAUGCUGUCCGGG----CGGGUCGUUUGCCCUGCCAGCGCCUGCUAUUUAA (((.(((((.((-((.----((((.(((((((....(((((((.((....).).))))))----)))))))))))).).)))..))))).)))..... ( -43.80) >DroSim_CAF1 11104 89 - 1 UGGGGGGGUGGG-GCU----GCAGGACGACCCAAAAGCCCGGGGACUCAUGCUGUCCGGG----CGGGUCGUUUGCUCUGCCAGCGCCUGCUAUUUAA ..((.(((((.(-((.----((((.(((((((....(((((((.((....).).))))))----))))))))))))...)))..))))).))...... ( -45.80) >DroEre_CAF1 13436 72 - 1 -----------U-G--------GGGAGGACCCAAAAGCCCGGACAU--UUAGUGUCCGGG----CGGGUCGUUUGCUCUGCCAGCGCCUUCUAUUUAA -----------.-.--------((((((((((....((((((((((--...)))))))))----))))))....(((.....)))..)))))...... ( -33.20) >DroYak_CAF1 13593 80 - 1 -----------G-GAA----GCAGGAGGAGCCAAAAGCCCGGACAU--UUACUAUCCGGGCGGGCGGGUCGUUUGCUCUGCCAGCGCCUUCUAUUUAA -----------.-(((----..((((((.((.....(((((((...--......))))))).(((((((.....)).))))).)).)))))).))).. ( -32.90) >consensus _GGGGGG__GGG_GGU____GCAGGACGACCCAAAAGCCCGGGGACUCAUGCUGUCCGGG____CGGGUCGUUUGCUCUGCCAGCGCCUGCUAUUUAA ....................(((((..(((((.....((((((.(.......).)))))).....)))))(((.((...)).))).)))))....... (-20.70 = -21.90 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:51 2006