Locus 7479

Sequence ID X_DroMel_CAF1
Location 18,664,496 – 18,664,596
Length 100
Max. P 0.943329
window12267

overview

Window 7

Location 18,664,496 – 18,664,596
Length 100
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 73.31
Mean single sequence MFE -22.29
Consensus MFE -13.36
Energy contribution -14.68
Covariance contribution 1.32
Combinations/Pair 1.11
Mean z-score -1.92
Structure conservation index 0.60
SVM decision value 1.33
SVM RNA-class probability 0.943329
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18664496 100 + 22224390
CCCGGCACUUGCGGUCAAUCGAUAACAAAUCGCGCCUUCCGAUAUCGAUAGUCAGCGAGCAGUUUUGCUUGUAACAACAAUUUUAAUUGGACAA--------------------GCUAAA
.......(((((.(.(.(((((((.....(((.......)))))))))).).).))))).......((((((.....((((....)))).))))--------------------)).... ( -21.80)
>DroSec_CAF1 9552 94 + 1
------GCUUGCGGUCAAUCGAUAACAAAUCGCACCUUCUGAUAUCGAUAGACAGCAAGCCGUUUUGCUUGUAAAUACAAUUUUAAUUGGACAA--------------------ACUAAA
------((((((.(((.(((((((.((............)).))))))).))).)))))).((((..((..((((......))))...))..))--------------------)).... ( -24.10)
>DroSim_CAF1 7659 94 + 1
------GCUUGCGGUCAAUCGAUAACAAAUCGCACCUUCUGAUAUCGAUAGACAGCGAGCCGUUUUGCUUGUAAAUACAAAUUUAAUUGGACAA--------------------GGUAAA
------((((((.(((.(((((((.((............)).))))))).))).)))))).......(((((.....(((......))).))))--------------------)..... ( -25.20)
>DroEre_CAF1 9832 120 + 1
CGCGGCACUUGCGGUCAAUCGAUAACAUAUCGCGCCUUCUGUUAUCGAAAGACAGCGAAUAGUUUUGUUUGCAAACACAAUUUAAAGUAAAUAAAAAUUAUAACACAAAUUGAAGUUAAA
(((.((....)).(((..(((((((((.(........).)))))))))..))).))).((((((((((((((..............)))))).))))))))................... ( -24.54)
>DroYak_CAF1 9777 85 + 1
CGC---------GGUCAAUCGAUAACAUAUCGCGCCUUCUGAUAUCGAUAGACAGU------UUUAUUUUGUAAAUACAAUUUAAAUUAAACAA--------------------GCUAAA
.((---------.(((.(((((((.((.(........).)).))))))).)))...------((((..((((....))))..))))........--------------------)).... ( -15.80)
>consensus
C_C___ACUUGCGGUCAAUCGAUAACAAAUCGCGCCUUCUGAUAUCGAUAGACAGCGAGCAGUUUUGCUUGUAAAUACAAUUUUAAUUGGACAA____________________GCUAAA
......((((((.(((.(((((((.((.(........).)).))))))).))).))))))............................................................ (-13.36 = -14.68 +   1.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:56 2006